Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01310 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGCAAAAATCAGTGGGCTCGTATCTCCTCCCTTCTCGTTCGTAAATCAGCCAAACAGTGTAAAGCTCGCTGGTATGAATGGCTTGACCCCTCCATTAAGAAGACGGAGTGGACTCGAGAGGAAGATGAGAAGCTACTCCACCTTGCTAAGCTCATGCCAACTCAGTGGAGAACTATTGCTCCCATTGTCGGCCGGACTCCATCCCAGTGCCTTGAACGGTATGAAAAACTCCTTGATGCAGCATGTGTCAAAGATGACAACTATGAACCTGGTGATGACCCACGTAAGTTACGTCCTGGGGAGATAGACCCAAACCCTGAATCAAAGCCGGCACGTCCTGATCCCGTTGACATGGATGAAGATGAAAAAGAAATGCTTTCTGAAGCACGAGCCAGGTTAGCGAATACTAGAGGTAAAAAAGCAAAGAGGAAAGCAAGGGAGAAACAGCTGGAAGAAGCTAGGCGACTTGCTTCTTTACAAAAGAGAAGAGAATTAAAGGCAGCCGGTATTGATAATAGACATCGGAAGAGGAAGAGGAAAGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAGGCCTCCTCCTGGGTTTTTTGATGTGACTGAGGAAGATAGACCTGTGGAGCAGCCCAAATTTCCTACCACGATTGAAGAACTTGAAGGGAAAAGAAGAGTTGATGTGGAATCACAATTAAGAAAGCAAGATGTTGCTAAGAATAAAATCGCACAAAGACAGGATGCTCCATCAGCTATATTGCAAGCCAACAAGTTAAATGATCCTGAAACCGTGAGAAAAAGATCAAAACTAATGCTTCCTGCTCCTCAAATTTCAGATCACGAACTAGAGGAAATTGCAAAGATGGGCTATGCTAGTGATCTTCTTACTGGGAGTGAGGAGCTCATTGAAGGCAGTGGAGCAACACGTGCTCTTCTTGCAAATTATGCTCAAACACCACGACAGGGAATGACACCTTTTCGGACACCACAAAGAACTCCTGCTGGTAAGGGAGATGCAATAATGATGGAAGCAGAAAACCTGGCTAGGTTGAGAGAGTCTCAGACACCATTGTTAGGAGGAGAGAATCCAGAGTTGCATCCATCAGATTTTTCTGGCGTCACTCCCAAGCGAAAAGAAATACAGACTCCAAATCTGATGTTGACGCCTGCGGCAACACCTGGGGGCCCTGGTCTCACTCCAAGAAGTGGCCTGACACCAGCCAGGGAAGGTTATTCTTTTGGAATGACTCCAAAGGGTACTCCGATTAGGGATGATTTACACATCAACGAAGAGATGGACATTCATGATAATGCTAAACTTGAGCTAAGGAGACAAGCCGATTTGAGGAGGAACTTACGTTCAGGTTTGGGCAATCTTCCACAGCCCAAGAATGAGTATCAAATAGTTATGCAGCCAGTTCAAGAAGACAATGAGGAACCTGAGGAGAAAATTGAAGAGGATATGTCAGATAGAATTGCTAGAGAGAGAGCTGAGGAAGATGCAAGGCAGCAAGCATTACTTAGGAAGAGATCTAAAGTACTTCAACGAGAGCTTCCCAGACCTCCTCTTGCTTCATTAGAATTAATTAAGAATTCTTTAATGAGAGCTGATGAAGACAAGAGCTCATTTGTTCCTCCTACTTCCATCGAACAGGCTGATGAAATGATTAGGAAGGAGCTTGTATCACTACTGGAGCATGACAATGCAAAGTATCCTCTGAATGACAAAGTTAATAAAGAGAAGAGGAAAAGTATTAAGCGTTCTACTGTTGATCCCATTCCTACGATTGAAGAATTTGAAGAAGATGAGCTAAATGAGGCTGTTTTTTTAATAAATGAAGAGGTTGAGTGCCTTCGAGTGGCGATGGGACATGAAAATGAATCCCTTGATGAATTTGTCGAGGCACATAAAACTTGCCAGAATGATCTCATGTATTTTCCCACTCGAAATGCTTATGGTCTTTCAAGTGTTGCTGGAAATATGGAGAAGCTTGCAGCCTTGCAAAATGAATTTGAGAATGTGAAAAAGAAAATGGATGATGATACTGAAAAGGCTGTACGGATGGAGAAGAAGGTTAAAGTTCTTACGCAGGGTTATGAGACAAGGGCTAAAACAAGCCTCTGGCCTCAAATTGAAGCAACCTTCAAGCAGATGGACACTGCTGCAACAGAACTGGAGTGCTTCCAAGCTTTACACAAGGAAGAGCTATTAGCTGCCTCGCACAGGATAAATATTCTCCGGGAAGAAGTTCAAAAGCAAAAGGAGCTTGAGCATATTTTACAGATGCGATATGCGAATCGTGTAATGGAGTTGGAAAGAACACAACACCTTATCAATGAATACAGAGCAGAAGCAAAACAGCAAGAAGAAATTGCAGCTGCAAATCGTGCTCGTGAGCTAGAGGTTACTGAAGCAAGTGAAAATAAAGGACCGATCGAAGCAACCGAACCAATGACTTCTGTTGCAGGGGATTCATTAGCTGATGAAAATGCTTCTCAAAATCCGAGTACAGTTGATAATGCCTCAGAGAAAGATCCAGCAATAGTGAGTATGGATGTTGATATACCCGACAATATTTCTTCTGCCAGTGAGGTGGGACCTGCAGTAGTAGCACAAGAAGATGGCAATGAAGATGGGATTTTGACGGAGGAAAATTTTGATTCTTCTGGGAAACTTTCTGAATCAGTCCTTGCTGACGAAGACAAGATTTCAAGTGAGCAGCATAAGCATATCACAGAAAGCACGAACCCAGGTGTTGAGTCGACTCAACGAGATGAAACCACCCCAAACTCGGCAGAAGCATGA 2880 43.37 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVTEEDRPVEQPKFPTTIEELEGKRRVDVESQLRKQDVAKNKIAQRQDAPSAILQANKLNDPETVRKRSKLMLPAPQISDHELEEIAKMGYASDLLTGSEELIEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRKEIQTPNLMLTPAATPGGPGLTPRSGLTPAREGYSFGMTPKGTPIRDDLHINEEMDIHDNAKLELRRQADLRRNLRSGLGNLPQPKNEYQIVMQPVQEDNEEPEEKIEEDMSDRIARERAEEDARQQALLRKRSKVLQRELPRPPLASLELIKNSLMRADEDKSSFVPPTSIEQADEMIRKELVSLLEHDNAKYPLNDKVNKEKRKSIKRSTVDPIPTIEEFEEDELNEAVFLINEEVECLRVAMGHENESLDEFVEAHKTCQNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVKKKMDDDTEKAVRMEKKVKVLTQGYETRAKTSLWPQIEATFKQMDTAATELECFQALHKEELLAASHRINILREEVQKQKELEHILQMRYANRVMELERTQHLINEYRAEAKQQEEIAAANRARELEVTEASENKGPIEATEPMTSVAGDSLADENASQNPSTVDNASEKDPAIVSMDVDIPDNISSASEVGPAVVAQEDGNEDGILTEENFDSSGKLSESVLADEDKISSEQHKHITESTNPGVESTQRDETTPNSAEA 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9811747 9816040 - Bpe004637.3 Bpe11g01310 111455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01310 959 MobiDBLite consensus disorder prediction 157 176 - -
Bpe11g01310 959 Gene3D - 5 58 - -
Bpe11g01310 959 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bpe11g01310 959 Coils Coil 682 716 - -
Bpe11g01310 959 Coils Coil 167 187 - -
Bpe11g01310 959 SMART sant 58 105 IPR001005 -
Bpe11g01310 959 SMART sant 6 55 IPR001005 -
Bpe11g01310 959 MobiDBLite consensus disorder prediction 851 870 - -
Bpe11g01310 959 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bpe11g01310 959 CDD SANT 10 53 IPR001005 -
Bpe11g01310 959 Gene3D - 59 114 - -
Bpe11g01310 959 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Bpe11g01310 959 MobiDBLite consensus disorder prediction 919 934 - -
Bpe11g01310 959 CDD SANT_CDC5_II 55 106 - -
Bpe11g01310 959 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Bpe11g01310 959 Coils Coil 796 823 - -
Bpe11g01310 959 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Bpe11g01310 959 MobiDBLite consensus disorder prediction 935 959 - -
Bpe11g01310 959 Pfam Myb-like DNA-binding domain 10 70 - -
Bpe11g01310 959 MobiDBLite consensus disorder prediction 213 233 - -
Bpe11g01310 959 PANTHER - 1 839 - -
Bpe11g01310 959 MobiDBLite consensus disorder prediction 110 150 - -
Bpe11g01310 959 Pfam pre-mRNA splicing factor component 407 655 IPR021786 -
Bpe11g01310 959 MobiDBLite consensus disorder prediction 883 959 - -
Bpe11g01310 959 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 839 - -
Bpe11g01310 959 MobiDBLite consensus disorder prediction 851 868 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01310 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 1392.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01310 Bpe-Chr11:9811747 Bpe04g01326 Bpe-Chr4:19845724 5.06E-11 dispersed
Bpe11g01310 Bpe-Chr11:9811747 Bpe09g00664 Bpe-Chr9:15273420 1.65E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g605 Blo10g00270 . . . Bpe11g01310 . Bma13g00410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g03418 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01310 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.2 0.0e+00 1146.3
Bpe09g00664 . 282 390 MYB-Related Transcription Factor Family AT1G09770 83.5 2.1e-43 174.5
Bpe12g00703 BCT,CCT 188 668 MYB-Related Transcription Factor Family AT3G18100 55.4 3.9e-149 525.4
Bpe12g00703 BCT,CCT 188 668 MYB-Related Transcription Factor Family AT3G18100 55.4 3.9e-149 525.4
Bpe11g01310 . 1 832 MYB-Related Transcription Factor Family AT1G09770 74.2 0.0e+00 1146.3
Bpe09g00664 . 282 390 MYB-Related Transcription Factor Family AT1G09770 83.5 2.1e-43 174.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22097 PF11831 Myb_Cef 8.10E-58 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01310 Bpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.806649 0.360967 0.347705 0.645929 0.579739 0.621683