Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01312 ATGGATTCCTCCGTCTTCATCTTTTCTGGTTCTTCTTCTTTTTCCTCTTCAATGGAGTCTTTCTCGTGGAAATCTAGCCTTCATTTGGAGAACAATCTCTTACCTTTCAATCAGAACGATTCCGAAGAAATGCTTCTTTACGGAGTTCTTTCTGAGCCCGTCATCAATCGTTCTTCCGATTCTAATTTCTCGTCACATTTGTCGAACGATCAGGAGGAGGTGGATTCGGAATCTGCGAAAGAGTCGGAGGTTTGTTACAGAGGAGTGAGGAGAAGGCCGTGGGGAAAATTCGCTGCGGAGATCAGAGATTCCACGAGAAATGGAGTTAGGGTTTGGTTGGGGACTTTCGACACGGCGGAGGCGGCGGCGCTGGCGTACGATCAAGCGGCGTTCGCGATGCGAGGCTCAAGCGCTGTGCTTAATTTCCCGGCGCAAATGGTGGAGCAATCACTGCGCGAGATGAATTACGGAGCGGAGGAGGGGAGTTCCCCTGTTCTGGCTCTGAAGAAGAGGCATTCGATGAAGAAAAAACCTAAAAATTCGAAAACGAAGAAGAAGGAGAACGATTCAGTTTCGGAAAACGTGGTGGTGTTTGAAGATTTGGGGGCTGAGTACTTGGAAGAACTTTTGGGATTGTACGTAGCTTCTTCCAATCCATGGTGA 663 48.27 MDSSVFIFSGSSSFSSSMESFSWKSSLHLENNLLPFNQNDSEEMLLYGVLSEPVINRSSDSNFSSHLSNDQEEVDSESAKESEVCYRGVRRRPWGKFAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAAFAMRGSSAVLNFPAQMVEQSLREMNYGAEEGSSPVLALKKRHSMKKKPKNSKTKKKENDSVSENVVVFEDLGAEYLEELLGLYVASSNPW 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9821697 9822359 - Bpe004639.1 Bpe11g01312 111457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01312 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 27 212 - -
Bpe11g01312 220 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Bpe11g01312 220 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Bpe11g01312 220 PANTHER DNA-BINDING DOMAIN 27 212 IPR044808 GO:0003700|GO:0009873
Bpe11g01312 220 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Bpe11g01312 220 MobiDBLite consensus disorder prediction 61 80 - -
Bpe11g01312 220 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Bpe11g01312 220 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Bpe11g01312 220 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Bpe11g01312 220 MobiDBLite consensus disorder prediction 169 190 - -
Bpe11g01312 220 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Bpe11g01312 220 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01312 Bpe-Chr11:9821697 Bpe08g00819 Bpe-Chr8:10295982 8.77E-34 dispersed
Bpe11g01312 Bpe-Chr11:9821697 Bpe14g01247 Bpe-Chr14:9403953 3.68E-61 wgd
Bpe11g01312 Bpe-Chr11:9821697 Bpe09g00646 Bpe-Chr9:15102714 4.58E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22098 PF00847 AP2 1.20E-15 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01312 K14516 - fve:101312740 209.534