Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01366 ATGGATCCTCAAGGACCAAGCCAACCTCCGTCGATGGGGGTGGTTGGGGGCGGGCTTCAATTTCCATACGGTTCAAGCTTTTACGAGCCGAACCAAATCGCTGGAACCCAAAGTGCTGGGACGATGATCGGAGCCGTTCAATCCGCAAGTCAGCCTGGGGGACCCCAGCTAGCATTTCAGCAGATGCACCAGCAACTCCAGCAGCAGCTCCAGAACTTCTGGGAGAATCAGAGCCGTGAAATCGAGAAGGTGACAGATTTCAAAAACCATAGCCTCCCATTGGCCAGGATCAAGAAGATCATGAAGGCGGACGAAGATGTGCGGATGATCTCGGCCGAGGCCCCCGTCGTGTTTGCCAGGGCGTGTGAAATGTTCATCTTGGAATTGACCCTCCGATCGTGGAATCACACGGAGGAGAACAAACGGAGGACGCTCCAGAAGAACGACATTGCAGCCGCAATCACGAGAACTGATATCTTTGACTTTTTGGTTGACATTGTCCCGAGGGACGATCCGAAAGACGAAGTGCTCGCCTCCTTCCCTCGGGGAGCTATGCCGGTTGGGGCCCCAGTCGACGGGATCCCCTACGACATGCCACCTCAGCATCCAGGGATGATGGCAGGGATGTATGCCCCTCCACCTCACCCCTACATGGTACCGCAAATGTGGCCCCACGTACCGGATCAACATCAATCGAGTTCCGATCAGTAG 711 55.41 MDPQGPSQPPSMGVVGGGLQFPYGSSFYEPNQIAGTQSAGTMIGAVQSASQPGGPQLAFQQMHQQLQQQLQNFWENQSREIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDPKDEVLASFPRGAMPVGAPVDGIPYDMPPQHPGMMAGMYAPPPHPYMVPQMWPHVPDQHQSSSDQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10229589 10230299 + Bpe004692.1 Bpe11g01366 111511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01366 236 Gene3D Histone, subunit A 56 169 IPR009072 GO:0046982
Bpe11g01366 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 236 - -
Bpe11g01366 236 SUPERFAMILY Histone-fold 66 163 IPR009072 GO:0046982
Bpe11g01366 236 Pfam Core histone H2A/H2B/H3/H4 61 154 IPR007125 GO:0003677
Bpe11g01366 236 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01366 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01628 Bpe-Chr4:22520131 Bpe11g01366 Bpe-Chr11:10229589 2.69E-11 dispersed
Bpe05g00636 Bpe-Chr5:20211021 Bpe11g01366 Bpe-Chr11:10229589 4.63E-32 dispersed
Bpe11g01366 Bpe-Chr11:10229589 Bpe13g00200 Bpe-Chr13:9976332 9.43E-62 dispersed
Bpe11g01366 Bpe-Chr11:10229589 Bpe12g00039 Bpe-Chr12:321227 2.37E-69 transposed
Bpe11g01366 Bpe-Chr11:10229589 Bpe15g00914 Bpe-Chr15:18944838 2.24E-69 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00222 BCT,CCT,ECH 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 76.4 7.8e-73 270.4
Bpe13g00200 BCT,CCT,ECH 56 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.9 8.6e-72 266.9
Bpe15g00914 . 72 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 67.1 1.6e-54 209.5
Bpe12g00039 . 81 216 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.8 1.9e-50 196.1
Bpe11g01366 . 71 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 2.1e-49 192.6
Bpe11g01366 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 77.5 4.0e-53 204.9
Bpe15g00914 . 52 245 CCAAT-HAP5 Transcription Factor Family AT1G08970 57.3 2.9e-48 188.7
Bpe12g00039 . 25 179 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 1.9e-47 186.0
Bpe13g00200 BCT,CCT,ECH 56 154 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.0e-41 166.0
Bpe15g00222 BCT,CCT,ECH 35 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.0e-41 166.0
Bpe15g00914 . 56 247 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.3 1.2e-54 209.9
Bpe11g01366 . 23 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.0 8.3e-53 203.8
Bpe12g00039 . 27 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 2.1e-51 199.1
Bpe15g00222 BCT,CCT,ECH 35 172 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.5 1.2e-48 189.9
Bpe13g00200 BCT,CCT,ECH 56 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.6 6.2e-48 187.6
Bpe15g00222 BCT,CCT,ECH 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.6 4.9e-65 244.6
Bpe13g00200 BCT,CCT,ECH 56 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.1 1.9e-64 242.7
Bpe15g00914 . 72 227 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.0 8.1e-52 200.7
Bpe12g00039 . 81 210 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.7 3.5e-47 185.3
Bpe11g01366 . 71 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 2.1e-44 176.0
Bpe12g00039 . 46 209 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.2 8.1e-63 236.9
Bpe15g00914 . 50 198 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.5 5.8e-61 230.7
Bpe15g00222 BCT,CCT,ECH 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.4 3.0e-49 191.8
Bpe11g01366 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 1.1e-48 189.9
Bpe13g00200 BCT,CCT,ECH 56 179 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.2 3.3e-48 188.3
Bpe04g01628 . 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 55.0 7.5e-65 244.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22107 PF00808 CBFD_NFYB_HMF 3.90E-18 CL0012 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01366 Bpe_Chr11 FPKM 33.954098 37.935955 28.311699 31.300718 42.23592 38.432076 42.000275 4.207644 3.670012 4.879239