Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01366 ATGGATCCTCAAGGACCAAGCCAACCTCCGTCGATGGGGGTGGTTGGGGGCGGGCTTCAATTTCCATACGGTTCAAGCTTTTACGAGCCGAACCAAATCGCTGGAACCCAAAGTGCTGGGACGATGATCGGAGCCGTTCAATCCGCAAGTCAGCCTGGGGGACCCCAGCTAGCATTTCAGCAGATGCACCAGCAACTCCAGCAGCAGCTCCAGAACTTCTGGGAGAATCAGAGCCGTGAAATCGAGAAGGTGACAGATTTCAAAAACCATAGCCTCCCATTGGCCAGGATCAAGAAGATCATGAAGGCGGACGAAGATGTGCGGATGATCTCGGCCGAGGCCCCCGTCGTGTTTGCCAGGGCGTGTGAAATGTTCATCTTGGAATTGACCCTCCGATCGTGGAATCACACGGAGGAGAACAAACGGAGGACGCTCCAGAAGAACGACATTGCAGCCGCAATCACGAGAACTGATATCTTTGACTTTTTGGTTGACATTGTCCCGAGGGACGATCCGAAAGACGAAGTGCTCGCCTCCTTCCCTCGGGGAGCTATGCCGGTTGGGGCCCCAGTCGACGGGATCCCCTACGACATGCCACCTCAGCATCCAGGGATGATGGCAGGGATGTATGCCCCTCCACCTCACCCCTACATGGTACCGCAAATGTGGCCCCACGTACCGGATCAACATCAATCGAGTTCCGATCAGTAG 711 55.41 MDPQGPSQPPSMGVVGGGLQFPYGSSFYEPNQIAGTQSAGTMIGAVQSASQPGGPQLAFQQMHQQLQQQLQNFWENQSREIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDDPKDEVLASFPRGAMPVGAPVDGIPYDMPPQHPGMMAGMYAPPPHPYMVPQMWPHVPDQHQSSSDQ 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10229589 10230299 + Bpe004692.1 Bpe11g01366 111511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01366 236 Gene3D Histone, subunit A 56 169 IPR009072 GO:0046982
Bpe11g01366 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 236 - -
Bpe11g01366 236 SUPERFAMILY Histone-fold 66 163 IPR009072 GO:0046982
Bpe11g01366 236 Pfam Core histone H2A/H2B/H3/H4 61 154 IPR007125 GO:0003677
Bpe11g01366 236 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01628 Bpe-Chr4:22520131 Bpe11g01366 Bpe-Chr11:10229589 2.69E-11 dispersed
Bpe05g00636 Bpe-Chr5:20211021 Bpe11g01366 Bpe-Chr11:10229589 4.63E-32 dispersed
Bpe11g01366 Bpe-Chr11:10229589 Bpe13g00200 Bpe-Chr13:9976332 9.43E-62 dispersed
Bpe11g01366 Bpe-Chr11:10229589 Bpe12g00039 Bpe-Chr12:321227 2.37E-69 transposed
Bpe11g01366 Bpe-Chr11:10229589 Bpe15g00914 Bpe-Chr15:18944838 2.24E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22107 PF00808 CBFD_NFYB_HMF 3.90E-18 CL0012 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01366 K08066 - csv:101209664 314.309