Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01413 ATGGTTTGCCAAGAAGAGCCTTTGGTACGCAAAGTCTGCGAAATGTACGACCAAATCTCAAACCTGGAGAACCTCAAACCTTGCGAAAATGTCGACATACTCTTCACCCAGCTGGTGCTGACTTGTATGCAACCAAGCCCTGTTGATGTAAACAAACTTTGCACGAGGGTTCAGCAAGTCAGAGCCAAACTCATTCGGCTCTGCGCTGAGGCTGAGGGTCTTTTAGAAAGCCATTTCTCGACCATCTTAGCCTCTTTTAAAAACCCACTTCAAAGTCTCGACCTTTTCCCTTACTATCCCAACTACCTCAAACTTAGCCTTCTTGAGTTCAATATCCTTACAGATCATTGCAAAAACCCACCCTCAAAACTTGCTTTTATTGGGTCTGGATCACTTCCTCTCACCTCCATTGTTTTAGCCCTTAATCACCTCCCCTCCACCATTTTTCACAACTATGATATCGACCCTTTAGCCAACTCAAAGGCTTTATCTTTGATTTCATCTCATCCTGATTTGTCAAAAAGAATGTTTTTTCACACTGCTGATATAATGAACGTTACCAATGCTTTGAAAGAGTACCAAGTCGTGTTTTTAGCTGCTTTAGTTGGTATGAACAAGGAAGAGAAAGCTAAAGTTGTAGACCATTTGTGCAAGTTTATGGCTCCTGGAGCTTATCTGATGGTTCGAAGCGCCCATGGAGCGAGGGCTTTTCTGTACCCAGTTGTTGAATTTGCCGATCTTCGCGGGTTTGAGATCCTGTCTGTGTTTCACCCAACTGACGAGGTTATAAATTCAGTCATTATTGCGAGGAAAGAGACGATATCCGTTGATCGATTTGATGAGCAGGGGAACAAATCCATGGTAATTTGTAAGTGCTCCGAAATGCAGACCTTCAGTGTTCCAAAAATGGAGGAATTCGCCACGGAGCAGCTTTCTTAA 939 43.34 MVCQEEPLVRKVCEMYDQISNLENLKPCENVDILFTQLVLTCMQPSPVDVNKLCTRVQQVRAKLIRLCAEAEGLLESHFSTILASFKNPLQSLDLFPYYPNYLKLSLLEFNILTDHCKNPPSKLAFIGSGSLPLTSIVLALNHLPSTIFHNYDIDPLANSKALSLISSHPDLSKRMFFHTADIMNVTNALKEYQVVFLAALVGMNKEEKAKVVDHLCKFMAPGAYLMVRSAHGARAFLYPVVEFADLRGFEILSVFHPTDEVINSVIIARKETISVDRFDEQGNKSMVICKCSEMQTFSVPKMEEFATEQLS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10515122 10516060 + Bpe004736.1 Bpe11g01413 111558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01413 312 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Bpe11g01413 312 PANTHER SYNTHASE, PUTATIVE-RELATED 1 303 - -
Bpe11g01413 312 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Bpe11g01413 312 Gene3D Vaccinia Virus protein VP39 7 273 IPR029063 -
Bpe11g01413 312 PANTHER NICOTIANAMINE SYNTHASE 3 1 303 IPR004298 GO:0030410|GO:0030418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01413 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - pop:112327508 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01840 Bpe-Chr2:20532770 Bpe11g01413 Bpe-Chr11:10515122 1.28E-143 dispersed
Bpe09g00561 Bpe-Chr9:14428648 Bpe11g01413 Bpe-Chr11:10515122 0 dispersed
Bpe10g00180 Bpe-Chr10:4939989 Bpe11g01413 Bpe-Chr11:10515122 1.81E-91 dispersed
Bpe11g01412 Bpe-Chr11:10510840 Bpe11g01413 Bpe-Chr11:10515122 2.63E-136 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g01840 CCT 1 318 Nicotianamine Synthase Gene Family AT1G09240 61.2 3.9e-107 384.8
Bpe11g01412 BCT,CCT 1 271 Nicotianamine Synthase Gene Family AT1G09240 65.7 2.1e-100 362.5
Bpe11g01413 . 1 312 Nicotianamine Synthase Gene Family AT1G09240 58.1 3.3e-98 355.1
Bpe09g00561 BCT,CCT 1 306 Nicotianamine Synthase Gene Family AT1G09240 59.1 4.8e-97 351.3
Bpe08g00689 . 16 281 Nicotianamine Synthase Gene Family AT1G09240 53.3 1.4e-72 270.0
Bpe10g00180 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 53.7 5.3e-72 268.1
Bpe02g01840 CCT 3 318 Nicotianamine Synthase Gene Family AT1G56430 58.4 8.5e-102 367.1
Bpe11g01412 BCT,CCT 3 271 Nicotianamine Synthase Gene Family AT1G56430 65.1 6.1e-100 360.9
Bpe11g01413 . 3 307 Nicotianamine Synthase Gene Family AT1G56430 58.8 2.0e-98 355.9
Bpe09g00561 BCT,CCT 4 303 Nicotianamine Synthase Gene Family AT1G56430 56.5 2.6e-95 345.5
Bpe08g00689 . 11 281 Nicotianamine Synthase Gene Family AT1G56430 52.0 5.7e-74 274.6
Bpe10g00180 . 16 281 Nicotianamine Synthase Gene Family AT1G56430 52.2 2.4e-72 269.2
Bpe02g01840 CCT 1 311 Nicotianamine Synthase Gene Family AT5G04950 58.2 4.2e-101 364.8
Bpe11g01412 BCT,CCT 1 271 Nicotianamine Synthase Gene Family AT5G04950 62.5 3.9e-99 358.2
Bpe09g00561 BCT,CCT 1 303 Nicotianamine Synthase Gene Family AT5G04950 56.2 3.4e-95 345.1
Bpe11g01413 . 1 271 Nicotianamine Synthase Gene Family AT5G04950 58.5 9.3e-93 337.0
Bpe10g00180 . 15 281 Nicotianamine Synthase Gene Family AT5G04950 50.6 9.0e-72 267.3
Bpe11g01412 BCT,CCT 1 271 Nicotianamine Synthase Gene Family AT5G56080 62.0 6.2e-97 350.9
Bpe02g01840 CCT 1 313 Nicotianamine Synthase Gene Family AT5G56080 55.5 2.6e-95 345.5
Bpe09g00561 BCT,CCT 1 303 Nicotianamine Synthase Gene Family AT5G56080 56.5 1.9e-93 339.3
Bpe11g01413 . 1 295 Nicotianamine Synthase Gene Family AT5G56080 55.0 1.6e-89 326.2
Bpe10g00180 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.4 1.1e-69 260.4
Bpe08g00689 . 15 281 Nicotianamine Synthase Gene Family AT5G56080 50.4 1.4e-69 260.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01413 Bpe_Chr11 FPKM 3.678197 4.57107 5.671585 5.59633 5.427057 4.576424 5.923967 22.461071 23.003843 22.90439