Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01485 ATGGGTGAAACTAAGTCGACTGAAATTAAAGATTTTCAGATTACCGTAGCAGATAAAGAAGAGGGGAAGAAGCAATTAGCTCCAAAAAGAAGCTCGAATAAAGACAGACACACTAAGGTAGATGGTCGAGGAAGAAGGATACGGATGCCAGCTCTGTGCGCAGCAAGAATTTTCCAATTGACAAGAGAATTAGGTCATAAATCAGATGGAGAAACCATCCAGTGGCTCTTGCAACAGGCGGAACCGTCGATAATTGGAGCTACCGGAACCGGGACTATCCCGGCTTCCGCTTTGGCCGCCTCCGGAGTATCTTTTTCACAGCAAGGGACCTCTTTATCAACCGGATTGCACCAAAAGATCGAGGATGATTTTGGGGGGTCAGGAAGTATGACCAGTTGGGCTTTGATGGGTGACAATTTGGGGAGACCACCGTCCCATATGGATTCAGGGCTATGGCCTCCGATCAGTGGCTTTGAGCCTAGGCCATCGTCTTCTCCAAACAGAAATTTGACGTCAGAGAGTGCAAATTATCTTCAGAAGATCGTTCCCGGGCTTGACTTGCCACTCGGAAATATGGGTACGATGACTTTCACCTCGATTCTGAGTGGCAATAGTCAGCATCTGCCGGAACTGGGACTCGGGCTTTCCCCAGAAGGTCACGTCGGAGTTTTGAACCCACAGGCCTTGAGCCAGTTTTACCAGCAGATGAAGCAGGCTAGAGTTCAAACGCCCCATCACCTAGCTTCTCCCAAGGATGACTCTCAAGATTCAGACTCAGCCAACTAG 786 48.85 MGETKSTEIKDFQITVADKEEGKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIGATGTGTIPASALAASGVSFSQQGTSLSTGLHQKIEDDFGGSGSMTSWALMGDNLGRPPSHMDSGLWPPISGFEPRPSSSPNRNLTSESANYLQKIVPGLDLPLGNMGTMTFTSILSGNSQHLPELGLGLSPEGHVGVLNPQALSQFYQQMKQARVQTPHHLASPKDDSQDSDSAN 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11046775 11047560 - Bpe004807.1 Bpe11g01485 111630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01485 261 Pfam TCP family transcription factor 32 119 IPR017887 -
Bpe11g01485 261 MobiDBLite consensus disorder prediction 144 171 - -
Bpe11g01485 261 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Bpe11g01485 261 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 4 251 - -
Bpe11g01485 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 251 IPR005333 GO:0003700
Bpe11g01485 261 MobiDBLite consensus disorder prediction 237 261 - -
Bpe11g01485 261 MobiDBLite consensus disorder prediction 1 44 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01485 - - - jre:108987051 365.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01485 Bpe-Chr11:11046775 Bpe14g01350 Bpe-Chr14:10779890 1.31E-102 dispersed
Bpe11g01485 Bpe-Chr11:11046775 Bpe13g01416 Bpe-Chr13:19402438 7.17E-39 wgd
Bpe11g01485 Bpe-Chr11:11046775 Bpe09g00550 Bpe-Chr9:14289329 7.07E-154 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00011 . 35 261 TCP Transcription Factor Family AT5G23280 54.0 2.3e-54 209.1
Bpe15g00954 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.6e-52 203.0
Bpe08g01471 BCT 92 370 TCP Transcription Factor Family AT2G45680 50.3 1.5e-54 210.3
Bpe15g00605 BCT,CCT,ECH 68 170 TCP Transcription Factor Family AT3G47620 82.7 3.3e-41 166.4
Bpe09g00550 . 1 287 TCP Transcription Factor Family AT3G27010 53.1 7.3e-66 247.7
Bpe11g01485 . 6 257 TCP Transcription Factor Family AT3G27010 55.4 5.0e-59 224.9
Bpe15g00954 . 1 259 TCP Transcription Factor Family AT5G08330 51.6 5.9e-60 227.6
Bpe12g00011 . 1 259 TCP Transcription Factor Family AT5G08330 51.8 1.5e-58 223.0
Bpe12g00521 CCT 27 126 TCP Transcription Factor Family AT5G60970 77.2 1.9e-38 156.8
Bpe14g00144 . 29 154 TCP Transcription Factor Family AT3G02150 65.4 9.5e-38 154.5
Bpe15g00176 BCT,CCT,ECH 8 191 TCP Transcription Factor Family AT2G31070 53.8 6.4e-42 168.3
Bpe12g00269 . 14 198 TCP Transcription Factor Family AT2G31070 53.5 2.7e-40 162.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22118 PF03634 TCP 4.40E-31 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01485 Bpe_Chr11 FPKM 5.306233 7.410416 5.873093 6.109895 11.817775 7.348932 11.743811 6.325345 6.782216 7.379677