Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01519 ATGGCTTCTTCTTCAAACTATTCGAATTCTCCATGTGCTGCCTGTAAGTTCTTGAGGAGAAAATGCTTGCCAAATTGCATTTTCGCCCCGTATTTCCCTCCTGAAGAGCCACAGAAATTTGTGAATGTTCACAAAATATTTGGAGCAAGTAATGTGAGTAAGCTTCTGAATGAAGTCTTACCTCATCACAGAGAAGATGCAGTAAATTCTCTTGCGTATGAAGCAGAAGCAAGAATCAAAGATCCAGTCTATGGCTGCGTTGGAGCCATTTCAATCCTGCAAAAGCAAGTTCTTCGCCTGAAGAAAGAGTTAGACGCTACAAATGCAGATCTGATAAGGTATGCCTATAATGAATTACCCACTTCTCAGTTTGGAAGGAGATTCGGCCATGATTCCAGTCTGTTTTTCTCTCCTCCTGCAAACAATGGCGGATATGGAGATGCCCATCAGAAAGGAGAAGAAAGCTCATGA 471 42.04 MASSSNYSNSPCAACKFLRRKCLPNCIFAPYFPPEEPQKFVNVHKIFGASNVSKLLNEVLPHHREDAVNSLAYEAEARIKDPVYGCVGAISILQKQVLRLKKELDATNADLIRYAYNELPTSQFGRRFGHDSSLFFSPPANNGGYGDAHQKGEESS 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11281461 11281931 - Bpe004842.1 Bpe11g01519 111664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01519 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 123 - -
Bpe11g01519 156 Coils Coil 90 110 - -
Bpe11g01519 156 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Bpe11g01519 156 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Bpe11g01519 156 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 4 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00374 Bpe-Chr10:11320668 Bpe11g01519 Bpe-Chr11:11281461 2.30E-33 dispersed
Bpe11g01519 Bpe-Chr11:11281461 Bpe12g00665 Bpe-Chr12:12311949 7.04E-73 dispersed
Bpe15g00346 Bpe-Chr15:15008398 Bpe11g01519 Bpe-Chr11:11281461 5.97E-45 dispersed
Bpe11g01519 Bpe-Chr11:11281461 Bpe07g00855 Bpe-Chr7:14679814 6.47E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22123 PF03195 LOB 5.70E-41 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01519 - - pvy:116145256 243.047