Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01556 ATGGCCGGAAGGTACTTGTACAAAGATGTTCTTCCGTTTCCGGCGATGGTGACGATGGAGTGTATAAACGTGGGGTTAAATACACTTTTCAAAGCTGCCACTCTGAGGGGGATGAATTACCATGTCTTTGTCGTTTATGCTTATGCTGTTGCCGCTCTTCTTCTCCTCCCCGCTCCCTTTCTCTCCCACGGATCGAGAGGGCTTCCTCCACTCAACTTTTCTATTATGTCTAAAGTGGGTCTTCTTGGATTGATCGGGAGTTCATCTCAGATCATGGGGTTCAAAGGCATCAATTACAGCTCTCCAACACTTGCTTCATCCATCAGCAATTTGGTTCCTGCGTTCACCTTCGTTCTCGCCATTATTTTCAGAATGGAGAAGTTGGTCTTCAAAAGCACGAGCAGCCAAGCAAAAATACTTGGCACCATAGTATCCATATCAGGAGCATTTGTAGTAACTCTCTACAAGGGTCCATCCATCATTTTCTCTCTGTCGCCGCCATCTCGACTCCAGCAACTACTAACCTCATCGCCGGAATCCAATTGGGTCGTCGGAGGTCTATTATTGACCGGCGAATACATTCTGGTCCCACTCTGGTACATTGTTCAGGCACAAATCATGAAGGAATATCCAGAAGAACTCACAATAGTGTTCTTCTACAATTTAAGTGTCAGTGTTATAGCTGCCATTGTTTGTCTGATCATTGGAACAGATTCAAGTGCTTGGATTCTTGAGCCAAAGATGGCATTGGCCTCTGTTTTGTGCTCTGGACTTTTCGGTTCGTGCTTGAGCAACACTGTCCACACGTGGGCCCTGCGCTTAAAGGGTCCTGTTTTTGTTGCGATGTTCAAGCCGTTGTCGATTGTCATTGCCATTGCCATGGGCGTTATGTTCCTTGGAGACACACTTCATCTTGGAAGTCTTGTTGGAGCATCGATAATATCCATAGGATTCTATACTGTGATGTGGGGAAAAGCAAGAGAAGAGGTTGAAGACAAGGAAGAGCTGGTCATTAGCTGCTTAGAATCGCAATCTTCGGAGAAGGTCCCTCTTTTGCAGAACAAAAAAACAGAAGGGCAATTGTGA 1086 45.67 MAGRYLYKDVLPFPAMVTMECINVGLNTLFKAATLRGMNYHVFVVYAYAVAALLLLPAPFLSHGSRGLPPLNFSIMSKVGLLGLIGSSSQIMGFKGINYSSPTLASSISNLVPAFTFVLAIIFRMEKLVFKSTSSQAKILGTIVSISGAFVVTLYKGPSIIFSLSPPSRLQQLLTSSPESNWVVGGLLLTGEYILVPLWYIVQAQIMKEYPEELTIVFFYNLSVSVIAAIVCLIIGTDSSAWILEPKMALASVLCSGLFGSCLSNTVHTWALRLKGPVFVAMFKPLSIVIAIAMGVMFLGDTLHLGSLVGASIISIGFYTVMWGKAREEVEDKEELVISCLESQSSEKVPLLQNKKTEGQL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11582484 11584276 + Bpe004881.1 Bpe11g01556 111701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01556 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Bpe11g01556 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 227 327 - -
Bpe11g01556 361 PANTHER WAT1-RELATED PROTEIN 9 348 IPR030184 GO:0016021|GO:0022857
Bpe11g01556 361 PANTHER WAT1-RELATED PROTEIN 9 348 - -
Bpe11g01556 361 Pfam EamA-like transporter family 200 322 IPR000620 GO:0016020|GO:0016021
Bpe11g01556 361 Pfam EamA-like transporter family 24 153 IPR000620 GO:0016020|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01556 - - - qsu:111986879 498.819
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe09g00484 Bpe11g01556 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01556 Bpe-Chr11:11582484 Bpe13g01452 Bpe-Chr13:19808848 6.20E-73 dispersed
Bpe11g01556 Bpe-Chr11:11582484 Bpe09g00484 Bpe-Chr9:13261333 6.40E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1391 . Blo11g00672 . . . . . Bma13g00519 . Cmo11g01704 Cma11g01416 . . . . . . Bhi06g00490 . . . Hepe02g1869 . Lcy10g0273 Cla10g01375 Cam10g1234 Cec10g1459 Cco10g1431 Clacu10g1434 Cmu10g2202 Cre10g1584 . . Cone2ag0145 Cone16ag0909 Lsi02g01546 Csa05g02357 Chy04g01478 Cme04g01911 . . . . Bpe09g00484 Bpe11g01556 . . . . . . . . . . . Bhi11g03090 . . . . . . . . . . . . . . Csa03g03911 . Cme09g00341
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe05g00719 . 1 768 Nodulin-like Gene Family AT4G19180 56.2 1.2e-233 806.2
Bpe08g01054 . 16 279 Nodulin-like Gene Family AT3G45870 69.7 1.3e-98 356.3
Bpe11g00985 . 21 284 Nodulin-like Gene Family AT3G45870 67.0 2.8e-93 338.6
Bpe11g01556 BCT 1 358 Nodulin-like Gene Family AT3G28050 60.8 2.5e-118 422.2
Bpe05g00572 . 3 382 Nodulin-like Gene Family AT5G47470 57.2 3.9e-106 381.7
Bpe11g01556 BCT 1 329 Nodulin-like Gene Family AT5G40230 56.9 1.3e-98 356.7
Bpe11g01556 BCT 1 329 Nodulin-like Gene Family AT5G40240 55.1 1.1e-97 353.6
Bpe02g00369 CCT,ECH 16 271 Nodulin-like Gene Family AT3G53210 61.3 1.9e-88 322.4
Bpe02g01714 CCT,ECH 16 273 Nodulin-like Gene Family AT3G53210 59.7 2.2e-84 308.9
Bpe02g00828 . 101 367 Nodulin-like Gene Family AT2G37450 58.4 5.1e-81 297.7
Bpe15g01102 . 1093 1337 Nodulin-like Gene Family AT2G37450 54.3 2.7e-69 258.8
Bpe04g01845 . 100 334 Nodulin-like Gene Family AT2G37450 52.3 1.8e-65 246.1
Bpe04g00487 . 39 273 Nodulin-like Gene Family AT2G37450 52.7 1.5e-64 243.0
Bpe02g00828 . 15 364 Nodulin-like Gene Family AT2G37460 63.7 1.1e-124 443.4
Bpe15g01102 . 1008 1342 Nodulin-like Gene Family AT2G37460 58.8 7.4e-105 377.5
Bpe04g01845 . 12 340 Nodulin-like Gene Family AT2G37460 58.7 4.8e-104 374.8
Bpe04g01371 . 12 358 Nodulin-like Gene Family AT2G37460 53.1 6.2e-96 347.8
Bpe14g00378 . 16 336 Nodulin-like Gene Family AT2G37460 50.3 2.5e-89 325.9
Bpe04g00487 . 6 302 Nodulin-like Gene Family AT2G37460 53.2 1.0e-82 303.9
Bpe02g00369 CCT,ECH 1 386 Nodulin-like Gene Family AT1G75500 74.0 2.7e-155 545.0
Bpe02g01714 CCT,ECH 1 375 Nodulin-like Gene Family AT1G75500 71.5 1.6e-147 519.2
Bpe13g01452 . 9 332 Nodulin-like Gene Family AT1G60050 51.8 2.5e-97 352.4
Bpe13g00487 . 5 333 Nodulin-like Gene Family AT1G60050 50.6 1.8e-95 346.3
Bpe15g01102 . 1001 1327 Nodulin-like Gene Family AT5G13670 54.1 1.2e-96 350.1
Bpe04g01845 . 10 335 Nodulin-like Gene Family AT5G13670 52.7 1.1e-92 337.0
Bpe02g00828 . 11 335 Nodulin-like Gene Family AT5G13670 51.5 8.7e-90 327.4
Bpe04g01845 . 14 335 Nodulin-like Gene Family AT2G39510 67.7 5.1e-127 451.1
Bpe15g01102 . 1004 1338 Nodulin-like Gene Family AT2G39510 66.3 4.4e-126 448.0
Bpe02g00828 . 5 361 Nodulin-like Gene Family AT2G39510 59.3 2.2e-114 409.1
Bpe02g00072 . 6 350 Nodulin-like Gene Family AT2G39510 52.9 6.1e-96 347.8
Bpe04g01371 . 15 337 Nodulin-like Gene Family AT2G39510 54.9 8.9e-95 344.0
Bpe14g00378 . 18 361 Nodulin-like Gene Family AT2G39510 51.2 1.7e-93 339.7
Bpe15g01004 . 11 341 Nodulin-like Gene Family AT2G39510 50.9 1.0e-90 330.5
Bpe04g01947 . 11 343 Nodulin-like Gene Family AT2G39510 50.3 1.9e-89 326.2
Bpe04g00487 . 6 292 Nodulin-like Gene Family AT2G39510 55.6 2.5e-81 299.3
Bpe11g01556 BCT 4 338 Nodulin-like Gene Family AT4G15540 51.3 3.1e-94 342.0
Bpe14g00378 . 9 263 Nodulin-like Gene Family AT4G08290 62.9 6.7e-87 317.4
Bpe02g00828 . 15 262 Nodulin-like Gene Family AT4G08290 51.6 1.6e-64 243.0
Bpe04g00487 . 6 201 Nodulin-like Gene Family AT4G08290 52.0 1.1e-52 203.8
Bpe02g00072 . 1 354 Nodulin-like Gene Family AT4G08300 61.8 1.8e-116 416.0
Bpe14g00378 . 11 364 Nodulin-like Gene Family AT4G08300 52.0 1.1e-97 353.6
Bpe04g00487 . 6 295 Nodulin-like Gene Family AT4G08300 63.4 1.7e-93 339.7
Bpe04g01371 . 8 337 Nodulin-like Gene Family AT4G08300 52.1 3.1e-92 335.5
Bpe15g01102 . 1008 1329 Nodulin-like Gene Family AT4G08300 50.9 4.9e-85 311.6
Bpe10g00245 . 1 254 Nodulin-like Gene Family AT5G64700 63.6 1.1e-80 296.6
Bpe10g00246 . 1 254 Nodulin-like Gene Family AT5G64700 51.2 1.0e-65 246.9
Bpe10g00249 . 1 254 Nodulin-like Gene Family AT5G64700 50.6 5.7e-64 241.1
Bpe15g01004 . 1 404 Nodulin-like Gene Family AT5G07050 64.4 3.6e-142 501.5
Bpe04g01947 . 1 397 Nodulin-like Gene Family AT5G07050 65.0 1.5e-140 496.1
Bpe04g01371 . 9 390 Nodulin-like Gene Family AT5G07050 64.7 2.3e-133 472.2
Bpe02g00072 . 4 332 Nodulin-like Gene Family AT5G07050 52.5 2.7e-97 352.4
Bpe15g01102 . 1008 1353 Nodulin-like Gene Family AT5G07050 53.0 3.4e-92 335.5
Bpe04g01845 . 14 334 Nodulin-like Gene Family AT5G07050 54.3 4.1e-90 328.6
Bpe04g01371 . 12 386 Nodulin-like Gene Family AT3G56620 56.7 2.4e-108 389.0
Bpe15g01004 . 12 352 Nodulin-like Gene Family AT3G56620 54.0 5.1e-98 354.8
Bpe04g01947 . 12 380 Nodulin-like Gene Family AT3G56620 51.3 9.5e-97 350.5
Bpe13g01452 . 7 363 Nodulin-like Gene Family AT1G70260 52.6 5.7e-102 367.9
Bpe13g00487 . 4 335 Nodulin-like Gene Family AT1G70260 53.0 1.4e-100 363.2
Bpe11g00234 . 9 329 Nodulin-like Gene Family AT1G09380 64.3 1.3e-117 419.9
Bpe04g01371 . 12 368 Nodulin-like Gene Family AT2G40900 57.0 6.0e-110 394.4
Bpe04g01947 . 12 402 Nodulin-like Gene Family AT2G40900 50.1 1.2e-102 370.2
Bpe15g01004 . 12 352 Nodulin-like Gene Family AT2G40900 54.7 3.9e-101 365.2
Bpe02g00369 CCT,ECH 16 351 Nodulin-like Gene Family AT3G18200 59.8 2.1e-107 386.0
Bpe02g01714 CCT,ECH 16 347 Nodulin-like Gene Family AT3G18200 56.0 7.2e-100 360.9
Bpe11g01077 . 127 351 Nodulin-like Gene Family AT4G01440 50.2 6.4e-60 227.6
Bpe02g00072 . 1 355 Nodulin-like Gene Family AT1G44800 57.8 1.0e-111 400.2
Bpe14g00378 . 11 358 Nodulin-like Gene Family AT1G44800 52.7 4.1e-100 361.7
Bpe04g00487 . 6 302 Nodulin-like Gene Family AT1G44800 58.9 4.1e-92 335.1
Bpe04g01371 . 8 337 Nodulin-like Gene Family AT1G44800 52.7 9.1e-92 334.0
Bpe08g01054 . 103 376 Nodulin-like Gene Family AT5G45370 69.8 1.9e-105 379.0
Bpe11g00985 . 108 334 Nodulin-like Gene Family AT5G45370 67.4 1.6e-85 312.8
Bpe02g00072 . 1 308 Nodulin-like Gene Family AT1G21890 63.8 4.8e-111 397.9
Bpe04g01371 . 15 318 Nodulin-like Gene Family AT1G21890 55.5 7.2e-91 330.9
Bpe14g00378 . 12 313 Nodulin-like Gene Family AT1G21890 51.9 2.7e-90 328.9
Bpe04g00487 . 6 251 Nodulin-like Gene Family AT1G21890 63.6 6.3e-87 317.8
Bpe04g01947 . 9 321 Nodulin-like Gene Family AT1G21890 50.5 3.0e-81 298.9
Bpe02g00828 . 15 315 Nodulin-like Gene Family AT1G21890 51.3 1.5e-80 296.6
Bpe04g01845 . 11 313 Nodulin-like Gene Family AT1G21890 50.2 7.5e-80 294.3
Bpe15g01102 . 1008 1306 Nodulin-like Gene Family AT1G21890 50.5 5.4e-78 288.1
Bpe09g00432 . 1 562 Nodulin-like Gene Family AT1G80530 59.4 1.9e-189 659.1
Bpe02g02125 . 5 571 Nodulin-like Gene Family AT1G80530 58.3 4.2e-181 631.3
Bpe07g00801 . 9 611 Nodulin-like Gene Family AT1G74780 55.9 2.7e-182 635.2
Bpe07g00721 . 11 542 Nodulin-like Gene Family AT4G34950 70.4 1.1e-221 766.1
Bpe12g00478 . 7 579 Nodulin-like Gene Family AT5G14120 63.4 1.1e-200 696.4
Bpe07g00721 . 10 388 Nodulin-like Gene Family AT2G16660 71.6 2.7e-155 545.0
Bpe04g01899 . 1 560 Nodulin-like Gene Family AT2G39210 69.7 1.3e-217 752.7
Bpe15g01047 CCT 525 1090 Nodulin-like Gene Family AT2G39210 64.4 4.6e-210 727.6
Bpe15g01342 CCT 5 556 Nodulin-like Gene Family AT2G39210 64.6 2.4e-203 705.3
Bpe01g00214 . 15 571 Nodulin-like Gene Family AT2G39210 57.2 8.7e-185 643.7
Bpe12g00478 . 7 434 Nodulin-like Gene Family AT3G01930 63.0 5.2e-147 517.7
Bpe07g00801 . 6 607 Nodulin-like Gene Family AT1G18940 51.6 2.8e-171 598.6
Bpe12g00478 . 7 580 Nodulin-like Gene Family AT5G50520 50.9 3.0e-152 535.4
Bpe12g00478 . 7 580 Nodulin-like Gene Family AT5G50630 50.9 3.0e-152 535.4
Bpe07g00801 . 8 614 Nodulin-like Gene Family AT2G34350 50.2 9.7e-156 547.0
Bpe01g00214 . 23 557 Nodulin-like Gene Family AT2G28120 72.2 2.3e-227 785.0
Bpe04g01899 . 2 548 Nodulin-like Gene Family AT2G28120 62.9 6.6e-190 660.6
Bpe15g01342 CCT 7 560 Nodulin-like Gene Family AT2G28120 59.1 1.2e-183 639.8
Bpe15g01047 CCT 539 1103 Nodulin-like Gene Family AT2G28120 58.8 2.5e-181 632.1
Bpe02g00219 . 34 226 Nodulin-like Gene Family AT1G76800 69.9 5.9e-66 247.3
Bpe04g00346 . 16 221 Nodulin-like Gene Family AT1G76800 65.2 4.3e-64 241.1
Bpe02g01112 BCT 10 213 Nodulin-like Gene Family AT1G76800 65.2 8.9e-62 233.4
Bpe12g00308 . 36 214 Nodulin-like Gene Family AT1G76800 67.6 6.4e-60 227.3
Bpe14g00446 BCT 2 212 Nodulin-like Gene Family AT1G76800 60.7 2.7e-58 221.9
Bpe12g00316 . 40 226 Nodulin-like Gene Family AT1G76800 63.1 1.0e-54 209.9
Bpe15g00105 . 27 214 Nodulin-like Gene Family AT1G76800 60.1 8.3e-52 200.3
Bpe12g00316 . 39 228 Nodulin-like Gene Family AT3G25190 64.8 7.1e-60 227.3
Bpe02g00219 . 33 226 Nodulin-like Gene Family AT3G25190 61.3 3.9e-58 221.5
Bpe12g00308 . 34 217 Nodulin-like Gene Family AT3G25190 60.9 2.0e-54 209.1
Bpe02g01112 BCT 18 214 Nodulin-like Gene Family AT3G25190 58.2 8.4e-53 203.8
Bpe14g00446 BCT 20 212 Nodulin-like Gene Family AT3G25190 56.9 2.4e-52 202.2
Bpe04g00346 . 25 225 Nodulin-like Gene Family AT3G25190 55.2 5.1e-50 194.5
Bpe15g00105 . 34 216 Nodulin-like Gene Family AT3G25190 53.4 1.4e-44 176.4
Bpe02g00219 . 26 226 Nodulin-like Gene Family AT1G21140 69.2 5.3e-70 260.8
Bpe04g00346 . 9 225 Nodulin-like Gene Family AT1G21140 63.9 6.5e-68 253.8
Bpe02g01112 BCT 20 213 Nodulin-like Gene Family AT1G21140 67.5 6.7e-65 243.8
Bpe12g00308 . 27 216 Nodulin-like Gene Family AT1G21140 66.0 2.4e-62 235.3
Bpe14g00446 BCT 6 212 Nodulin-like Gene Family AT1G21140 62.0 1.5e-61 232.6
Bpe12g00316 . 31 226 Nodulin-like Gene Family AT1G21140 62.2 1.4e-57 219.5
Bpe15g00105 . 27 216 Nodulin-like Gene Family AT1G21140 61.3 3.7e-55 211.5
Bpe02g00219 . 20 223 Nodulin-like Gene Family AT3G43630 68.3 5.8e-69 257.3
Bpe04g00346 . 14 224 Nodulin-like Gene Family AT3G43630 65.7 6.1e-66 247.3
Bpe02g01112 BCT 1 212 Nodulin-like Gene Family AT3G43630 65.1 2.5e-64 241.9
Bpe12g00308 . 27 216 Nodulin-like Gene Family AT3G43630 67.5 9.0e-62 233.4
Bpe14g00446 BCT 1 209 Nodulin-like Gene Family AT3G43630 62.9 1.5e-61 232.6
Bpe12g00316 . 31 223 Nodulin-like Gene Family AT3G43630 63.2 2.3e-57 218.8
Bpe15g00105 . 27 216 Nodulin-like Gene Family AT3G43630 63.4 8.2e-55 210.3
Bpe02g00219 . 26 226 Nodulin-like Gene Family AT3G43660 68.2 1.7e-68 255.8
Bpe02g01112 BCT 12 213 Nodulin-like Gene Family AT3G43660 68.3 5.1e-65 244.2
Bpe04g00346 . 14 225 Nodulin-like Gene Family AT3G43660 64.0 5.1e-65 244.2
Bpe14g00446 BCT 8 212 Nodulin-like Gene Family AT3G43660 62.9 4.4e-61 231.1
Bpe12g00308 . 27 219 Nodulin-like Gene Family AT3G43660 64.2 4.2e-59 224.6
Bpe12g00316 . 31 226 Nodulin-like Gene Family AT3G43660 62.2 2.1e-58 222.2
Bpe15g00105 . 27 214 Nodulin-like Gene Family AT3G43660 61.2 7.6e-53 203.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004958 1 1 1 2 2 1 3 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 3 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01556 Bpe_Chr11 FPKM 8.708205 8.847689 14.296345 15.127884 8.649176 10.770998 9.168573 1.861638 1.693523 1.372129