Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01594 ATGGAGGCGGCTGATAACGATCCCGACTCTTATCGGACTTCTTCCGCTGGTGATAATTCTCGAAGATATGGGATGCTATCTGCTTCTAGTATAATTCAAGCGCCACTCTCGGCACTGCTGGAGTATTCTGGTCTTCTTCGGGGACGATCGAGTTTCCAAGAATCAGAGCCTTTGGGGAATGGTCGTATACACCCAGGGTTTCGGGATCGGCTACGTAATCAGCTTGAGGAATCTACGGGGGTCAACAACGATGGGGAGGTTTCGATTAGGATAATTGGCGCTGGGGAAGAAGAGCTTGAACGGGAAGCCACAGGGTTAGTAGTTGGGCAATCACGGGAAGTGGCTTCCCAGAGTGAGGTATCTATGCTTCAATCAATGCCAGGGTTGACCTCGACAACATTGGTGTCCGAAGGTGCTCAGGAAGATTCTAGAATCGATCGAGGTGCAGAGGAAGGGATTTCCCACTCAACGAACGGGGGTTCTGTTGGACAAACTGTAGATGGAGCTGGGGCAAATGCCAGAGATTCTTCTTACCAGAGGTACGATATTCAACAGGCAGCTAGGTGGGTCGAGCAGGTTCTCCCATTCAGTTTACTTTTGTTGGTAGTCTTCATCCGACAACATCTACAAGGTTTCTTTGTCACAATTTGGATTACTGCTGTTATGTTTAAGTCAAATGATATCCTACGGAAACAGACAGCTCTTAAGGGAGAGAGGAAACTTTCTGTTTTGATTAGTATTTCTCTTGCATTCACAATGCATGTCGTGGGTGTTTACTGGTGGTATCAGAATGATGATCTTCTGTATCCATTGGTCATGCTTCCTCCCAGAACAATACCCCCATTTTGGCATGCGATTTTCATCATTATGGTTAATGATACCTTGGTTCGGCAGGCTGTGATGGCATTCAAGTGTGTTCTGTTAATGCATTATAAGAATAGTAGGGGCCGTGAGTATCGTAAACAGGGTCAAATGCTAACATTGGTTGAATACCTACTTCTGCTGTACCGTGCCTTATTGCCGACTCCAGTATGGTATCGTTTCTTCTTGAATAAAGATTATGGGAGTTTGTTTTCATCGCTGATGACTGGATTGTATTTAACTTTTAAGCTAACGTCTATTGTTGAAAAGCTACAATCGTTCTTTGCGGCAGTGAAGGCATTGTCACGTAAAGAGGTACATTATGGGGCTTATGCTACATCAGAACAGGTCAATGCAGCGGGTGATCTATGTGCTATTTGCCAGGAGAAGATGCATACCCCTGTTCTACTTCGTTGCAAGCACATCTTCTGCGAGGACTGTGTATCAGAATGGTTCGAGAGGGAACGAACATGCCCATTGTGCAGGGCACTAGTGAAACCTGCAGATCTGAGGTCATTTGGTGACGGATCGACTAGTTTGTTTTTCCAGTTGTTCTAA 1419 45.53 MEAADNDPDSYRTSSAGDNSRRYGMLSASSIIQAPLSALLEYSGLLRGRSSFQESEPLGNGRIHPGFRDRLRNQLEESTGVNNDGEVSIRIIGAGEEELEREATGLVVGQSREVASQSEVSMLQSMPGLTSTTLVSEGAQEDSRIDRGAEEGISHSTNGGSVGQTVDGAGANARDSSYQRYDIQQAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWITAVMFKSNDILRKQTALKGERKLSVLISISLAFTMHVVGVYWWYQNDDLLYPLVMLPPRTIPPFWHAIFIIMVNDTLVRQAVMAFKCVLLMHYKNSRGREYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSIVEKLQSFFAAVKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHTPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12003360 12009629 + Bpe004915.1 Bpe11g01594 111739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01594 472 ProSiteProfiles Zinc finger RING-type profile. 411 449 IPR001841 -
Bpe11g01594 472 MobiDBLite consensus disorder prediction 1 20 - -
Bpe11g01594 472 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 472 - -
Bpe11g01594 472 CDD RING-HC_RNFT1_like 410 449 - -
Bpe11g01594 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 459 IPR013083 -
Bpe11g01594 472 SUPERFAMILY RING/U-box 404 454 - -
Bpe11g01594 472 Pfam Zinc finger, C3HC4 type (RING finger) 409 452 - -
Bpe11g01594 472 ProSitePatterns Zinc finger RING-type signature. 426 435 IPR017907 -
Bpe11g01594 472 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 472 IPR044235 GO:0061630|GO:1904294
Bpe11g01594 472 SMART ring_2 411 448 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01594 - - K22379 csv:101205267 732.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01594 Bpe-Chr11:12003360 Bpe08g00491 Bpe-Chr8:3209891 2.43E-07 dispersed
Bpe07g00981 Bpe-Chr7:15551630 Bpe11g01594 Bpe-Chr11:12003360 1.23E-07 transposed
Bpe11g01594 Bpe-Chr11:12003360 Bpe02g00942 Bpe-Chr2:8327128 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe14g00030 . 78 630 C3H Transcription Factor Family AT2G31510 64.2 9.8e-211 729.6
Bpe05g00982 . 73 598 C3H Transcription Factor Family AT2G31510 64.9 3.4e-195 677.9
Bpe05g00982 . 56 556 C3H Transcription Factor Family AT2G31770 51.9 3.3e-143 505.4
Bpe05g00982 . 56 556 C3H Transcription Factor Family AT2G31760 51.4 3.9e-141 498.4
Bpe14g00858 . 1 190 C3H Transcription Factor Family AT3G03550 56.0 2.5e-54 209.5
Bpe02g01427 . 1 217 C3H Transcription Factor Family AT3G02290 56.3 2.8e-67 251.9
Bpe11g00042 . 1 214 C3H Transcription Factor Family AT3G02290 53.5 3.8e-64 241.5
Bpe11g01184 . 1 222 C3H Transcription Factor Family AT3G02290 51.1 4.5e-57 218.0
Bpe01g00498 . 1 304 C3H Transcription Factor Family AT1G11020 76.9 1.1e-136 483.0
Bpe03g00704 . 39 213 C3H Transcription Factor Family AT1G50440 70.3 1.4e-66 249.6
Bpe10g00277 . 1 313 C3H Transcription Factor Family AT5G08750 58.8 7.5e-99 357.5
Bpe03g00056 . 1 418 C3H Transcription Factor Family AT3G16090 73.2 1.3e-162 569.7
Bpe04g00003 . 31 185 C3H Transcription Factor Family AT1G22510 74.2 3.2e-62 235.0
Bpe02g01427 . 1 217 C3H Transcription Factor Family AT5G38895 55.2 5.0e-65 245.0
Bpe02g00406 . 29 221 C3H Transcription Factor Family AT1G19310 69.5 7.8e-78 287.0
Bpe10g00217 . 23 232 C3H Transcription Factor Family AT1G19310 62.6 4.4e-73 271.2
Bpe15g00363 . 16 222 C3H Transcription Factor Family AT1G19310 59.8 3.3e-68 255.0
Bpe04g00003 . 35 185 C3H Transcription Factor Family AT1G72175 73.5 3.5e-58 221.1
Bpe10g00877 . 11 182 C3H Transcription Factor Family AT1G26800 54.0 4.4e-48 188.0
Bpe06g00062 . 1 291 C3H Transcription Factor Family AT2G22120 63.3 1.5e-107 386.3
Bpe15g01388 . 2 175 C3H Transcription Factor Family AT5G07040 59.8 4.7e-45 177.6
Bpe07g00730 CCT,ECH 1 389 C3H Transcription Factor Family AT1G18470 74.0 1.6e-172 602.4
Bpe12g00498 CCT,ECH 1 390 C3H Transcription Factor Family AT1G18470 73.1 4.0e-168 587.8
Bpe02g02288 . 1 382 C3H Transcription Factor Family AT1G18470 62.2 8.1e-137 483.8
Bpe02g02008 . 69 345 C3H Transcription Factor Family AT1G68200 51.9 2.8e-46 182.6
Bpe05g00982 . 56 556 C3H Transcription Factor Family AT2G31770 51.9 3.3e-143 505.4
Bpe05g00982 . 56 556 C3H Transcription Factor Family AT2G31760 51.4 3.9e-141 498.4
Bpe11g00597 . 19 310 C3H Transcription Factor Family AT5G55970 56.4 1.4e-88 323.2
Bpe10g00277 . 1 313 C3H Transcription Factor Family AT5G63780 54.7 1.0e-90 330.5
Bpe11g00597 . 21 366 C3H Transcription Factor Family AT4G26580 56.0 3.7e-108 388.3
Bpe11g01594 . 1 472 C3H Transcription Factor Family AT5G01960 68.1 1.4e-168 589.3
Bpe02g00942 . 1 470 C3H Transcription Factor Family AT5G01960 67.5 6.4e-166 580.5
Bpe07g00667 CCT 1 150 C3H Transcription Factor Family AT2G04240 52.5 1.9e-38 155.6
Bpe08g00291 CCT 1 226 C3H Transcription Factor Family AT5G19430 53.3 1.8e-59 226.1
Bpe01g00329 CCT 3 246 C3H Transcription Factor Family AT5G19430 51.2 7.0e-59 224.2
Bpe01g00329 CCT 1 246 C3H Transcription Factor Family AT5G12310 59.6 1.3e-60 229.9
Bpe08g00291 CCT 1 226 C3H Transcription Factor Family AT5G12310 51.5 9.4e-56 213.8
Bpe11g00385 . 27 158 C3H Transcription Factor Family AT5G47610 59.1 3.4e-38 154.8
Bpe03g01022 BCT 63 220 C3H Transcription Factor Family AT5G05830 64.8 2.6e-56 215.3
Bpe04g01242 . 60 219 C3H Transcription Factor Family AT5G05830 60.5 2.7e-53 205.3
Bpe04g01820 BCT 32 209 C3H Transcription Factor Family AT5G05830 56.9 2.1e-50 195.7
Bpe15g01136 . 22 208 C3H Transcription Factor Family AT5G05830 54.4 4.9e-47 184.5
Bpe02g01427 . 1 217 C3H Transcription Factor Family AT5G15790 57.3 1.3e-67 253.1
Bpe11g00042 . 1 214 C3H Transcription Factor Family AT5G15790 55.5 9.2e-66 246.9
Bpe11g01184 . 1 222 C3H Transcription Factor Family AT5G15790 50.9 6.4e-59 224.2
Bpe15g01279 . 1 269 C3H Transcription Factor Family AT3G55530 78.5 3.4e-112 401.4
Bpe10g00431 . 1 273 C3H Transcription Factor Family AT1G63900 75.5 2.6e-115 411.8
Bpe14g00881 . 10 326 C3H Transcription Factor Family AT2G44580 55.4 4.9e-96 348.2
Bpe07g00772 CCT 1 123 C3H Transcription Factor Family AT1G74410 56.9 3.5e-38 155.2
Bpe10g00217 . 30 157 C3H Transcription Factor Family AT1G74990 56.8 1.5e-39 159.1
Bpe02g00406 . 30 152 C3H Transcription Factor Family AT1G74990 61.6 1.5e-39 159.1
Bpe15g00363 . 20 147 C3H Transcription Factor Family AT1G74990 55.6 5.3e-37 150.6
Bpe02g01571 . 3 309 C3H Transcription Factor Family AT5G20910 63.8 1.1e-109 393.3
Bpe03g00056 . 119 419 C3H Transcription Factor Family AT1G65040 66.3 5.4e-101 364.4
Bpe10g00217 . 26 234 C3H Transcription Factor Family AT2G23780 61.8 6.2e-75 277.3
Bpe15g00363 . 19 223 C3H Transcription Factor Family AT2G23780 62.7 6.9e-74 273.9
Bpe02g00406 . 31 222 C3H Transcription Factor Family AT2G23780 57.8 1.5e-60 229.6
Bpe02g00032 CCT 1 316 C3H Transcription Factor Family AT3G10810 54.5 1.5e-81 300.4
Bpe03g01075 . 1 315 C3H Transcription Factor Family AT3G10810 54.4 5.6e-81 298.5
Bpe11g00663 . 1 144 C3H Transcription Factor Family AT1G63840 60.3 3.5e-43 171.4
Bpe05g00997 . 1 157 C3H Transcription Factor Family AT1G63840 52.2 1.0e-42 169.9
Bpe04g00921 . 1 157 C3H Transcription Factor Family AT1G63840 51.6 8.6e-42 166.8
Bpe08g01498 . 1 141 C3H Transcription Factor Family AT1G63840 58.2 1.6e-40 162.5
Bpe03g00045 . 6 359 C3H Transcription Factor Family AT1G68070 66.5 7.8e-130 460.3
Bpe10g00999 . 20 361 C3H Transcription Factor Family AT1G68070 67.7 1.6e-127 452.6
Bpe07g00121 . 53 368 C3H Transcription Factor Family AT1G68070 51.1 5.8e-85 311.2
Bpe02g00297 . 11 183 C3H Transcription Factor Family AT1G76410 54.9 1.8e-48 189.1
Bpe04g00288 . 5 182 C3H Transcription Factor Family AT1G76410 52.8 4.0e-48 188.0
Bpe02g01228 . 1 397 C3H Transcription Factor Family AT1G80400 54.7 2.2e-115 412.5
Bpe14g00565 . 1 392 C3H Transcription Factor Family AT1G80400 54.7 3.5e-113 405.2
Bpe10g00629 . 55 380 C3H Transcription Factor Family AT1G80400 59.5 1.3e-107 386.7
Bpe14g00030 . 78 630 C3H Transcription Factor Family AT2G31510 64.2 9.8e-211 729.6
Bpe05g00982 . 73 598 C3H Transcription Factor Family AT2G31510 64.9 3.4e-195 677.9
Bpe02g00697 . 5 167 C3H Transcription Factor Family AT2G35910 60.0 3.0e-50 195.3
Bpe04g01449 BCT 1 304 C3H Transcription Factor Family AT2G41980 77.7 9.3e-143 503.1
Bpe03g01154 BCT 3 306 C3H Transcription Factor Family AT2G41980 76.4 1.9e-140 495.4
Bpe03g00232 BCT 63 320 C3H Transcription Factor Family AT2G41980 80.2 7.7e-129 456.8
Bpe07g01014 BCT 68 324 C3H Transcription Factor Family AT2G41980 80.5 1.4e-127 452.6
Bpe13g00984 . 29 302 C3H Transcription Factor Family AT2G41980 75.1 1.4e-125 446.0
Bpe08g01243 . 6 302 C3H Transcription Factor Family AT2G41980 68.4 3.0e-125 444.9
Bpe14g00945 . 29 302 C3H Transcription Factor Family AT2G41980 75.5 3.9e-125 444.5
Bpe15g00979 CCT 41 307 C3H Transcription Factor Family AT2G41980 76.4 1.1e-124 443.0
Bpe04g01960 CCT 48 305 C3H Transcription Factor Family AT2G41980 77.9 2.0e-124 442.2
Bpe14g01321 . 84 350 C3H Transcription Factor Family AT3G06140 60.6 6.1e-93 337.8
Bpe03g01286 . 235 527 C3H Transcription Factor Family AT3G09770 58.2 1.6e-79 293.1
Bpe11g01467 . 54 616 C3H Transcription Factor Family AT3G26730 55.1 3.5e-164 575.5
Bpe12g00593 . 58 357 C3H Transcription Factor Family AT3G47990 70.5 3.0e-125 444.9
Bpe04g00288 . 5 190 C3H Transcription Factor Family AT1G20823 53.8 9.2e-51 196.8
Bpe02g00297 . 8 190 C3H Transcription Factor Family AT1G20823 54.6 2.7e-50 195.3
Bpe06g00140 . 20 229 C3H Transcription Factor Family AT5G66070 75.4 3.3e-73 271.6
Bpe13g00399 . 22 236 C3H Transcription Factor Family AT5G66070 70.7 5.3e-71 264.2
Bpe07g00730 CCT,ECH 5 467 C3H Transcription Factor Family AT1G73950 70.4 2.7e-191 664.8
Bpe12g00498 CCT,ECH 3 468 C3H Transcription Factor Family AT1G73950 68.5 3.7e-185 644.4
Bpe02g02288 . 1 460 C3H Transcription Factor Family AT1G73950 58.2 5.1e-158 554.3
Bpe10g00999 . 8 255 C3H Transcription Factor Family AT2G01735 63.5 9.0e-83 303.5
Bpe03g00045 . 9 253 C3H Transcription Factor Family AT2G01735 63.5 9.9e-82 300.1
Bpe05g00632 . 60 266 C3H Transcription Factor Family AT2G01735 50.2 7.7e-50 194.1
Bpe07g00121 . 53 263 C3H Transcription Factor Family AT2G01735 50.7 1.3e-49 193.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001607 2 3 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 3 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01594 Bpe_Chr11 FPKM 37.955856 41.092468 17.040022 16.707891 20.137365 18.284828 17.771698 13.094267 14.356923 14.172415