Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01594 ATGGAGGCGGCTGATAACGATCCCGACTCTTATCGGACTTCTTCCGCTGGTGATAATTCTCGAAGATATGGGATGCTATCTGCTTCTAGTATAATTCAAGCGCCACTCTCGGCACTGCTGGAGTATTCTGGTCTTCTTCGGGGACGATCGAGTTTCCAAGAATCAGAGCCTTTGGGGAATGGTCGTATACACCCAGGGTTTCGGGATCGGCTACGTAATCAGCTTGAGGAATCTACGGGGGTCAACAACGATGGGGAGGTTTCGATTAGGATAATTGGCGCTGGGGAAGAAGAGCTTGAACGGGAAGCCACAGGGTTAGTAGTTGGGCAATCACGGGAAGTGGCTTCCCAGAGTGAGGTATCTATGCTTCAATCAATGCCAGGGTTGACCTCGACAACATTGGTGTCCGAAGGTGCTCAGGAAGATTCTAGAATCGATCGAGGTGCAGAGGAAGGGATTTCCCACTCAACGAACGGGGGTTCTGTTGGACAAACTGTAGATGGAGCTGGGGCAAATGCCAGAGATTCTTCTTACCAGAGGTACGATATTCAACAGGCAGCTAGGTGGGTCGAGCAGGTTCTCCCATTCAGTTTACTTTTGTTGGTAGTCTTCATCCGACAACATCTACAAGGTTTCTTTGTCACAATTTGGATTACTGCTGTTATGTTTAAGTCAAATGATATCCTACGGAAACAGACAGCTCTTAAGGGAGAGAGGAAACTTTCTGTTTTGATTAGTATTTCTCTTGCATTCACAATGCATGTCGTGGGTGTTTACTGGTGGTATCAGAATGATGATCTTCTGTATCCATTGGTCATGCTTCCTCCCAGAACAATACCCCCATTTTGGCATGCGATTTTCATCATTATGGTTAATGATACCTTGGTTCGGCAGGCTGTGATGGCATTCAAGTGTGTTCTGTTAATGCATTATAAGAATAGTAGGGGCCGTGAGTATCGTAAACAGGGTCAAATGCTAACATTGGTTGAATACCTACTTCTGCTGTACCGTGCCTTATTGCCGACTCCAGTATGGTATCGTTTCTTCTTGAATAAAGATTATGGGAGTTTGTTTTCATCGCTGATGACTGGATTGTATTTAACTTTTAAGCTAACGTCTATTGTTGAAAAGCTACAATCGTTCTTTGCGGCAGTGAAGGCATTGTCACGTAAAGAGGTACATTATGGGGCTTATGCTACATCAGAACAGGTCAATGCAGCGGGTGATCTATGTGCTATTTGCCAGGAGAAGATGCATACCCCTGTTCTACTTCGTTGCAAGCACATCTTCTGCGAGGACTGTGTATCAGAATGGTTCGAGAGGGAACGAACATGCCCATTGTGCAGGGCACTAGTGAAACCTGCAGATCTGAGGTCATTTGGTGACGGATCGACTAGTTTGTTTTTCCAGTTGTTCTAA 1419 45.53 MEAADNDPDSYRTSSAGDNSRRYGMLSASSIIQAPLSALLEYSGLLRGRSSFQESEPLGNGRIHPGFRDRLRNQLEESTGVNNDGEVSIRIIGAGEEELEREATGLVVGQSREVASQSEVSMLQSMPGLTSTTLVSEGAQEDSRIDRGAEEGISHSTNGGSVGQTVDGAGANARDSSYQRYDIQQAARWVEQVLPFSLLLLVVFIRQHLQGFFVTIWITAVMFKSNDILRKQTALKGERKLSVLISISLAFTMHVVGVYWWYQNDDLLYPLVMLPPRTIPPFWHAIFIIMVNDTLVRQAVMAFKCVLLMHYKNSRGREYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKDYGSLFSSLMTGLYLTFKLTSIVEKLQSFFAAVKALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHTPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12003360 12009629 + Bpe004915.1 Bpe11g01594 111739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01594 472 ProSiteProfiles Zinc finger RING-type profile. 411 449 IPR001841 -
Bpe11g01594 472 MobiDBLite consensus disorder prediction 1 20 - -
Bpe11g01594 472 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 472 - -
Bpe11g01594 472 CDD RING-HC_RNFT1_like 410 449 - -
Bpe11g01594 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 459 IPR013083 -
Bpe11g01594 472 SUPERFAMILY RING/U-box 404 454 - -
Bpe11g01594 472 Pfam Zinc finger, C3HC4 type (RING finger) 409 452 - -
Bpe11g01594 472 ProSitePatterns Zinc finger RING-type signature. 426 435 IPR017907 -
Bpe11g01594 472 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 472 IPR044235 GO:0061630|GO:1904294
Bpe11g01594 472 SMART ring_2 411 448 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01594 Bpe-Chr11:12003360 Bpe08g00491 Bpe-Chr8:3209891 2.43E-07 dispersed
Bpe07g00981 Bpe-Chr7:15551630 Bpe11g01594 Bpe-Chr11:12003360 1.23E-07 transposed
Bpe11g01594 Bpe-Chr11:12003360 Bpe02g00942 Bpe-Chr2:8327128 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01594 - K22379 csv:101205267 732.635