Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01604 TACAGGTATAATAATATTCTTCTTGCAAAGATACCGAAGTTATGTACTAGATCAAAACATAATTTCACAGAAAAGCTTTTAGAGGTATCTAATTATGGAACAGGAAGAATTACAGATCAATCCAACTTGCTTAATAAGGTACCAATTGTGATGGGTTGTAATGGTCTTCATGGTTTGATTGAGGATGGCAACTGGAAAAAACATTCTGGTTTAACTTCTGCAGAAGGCGATGATTTTGATATCGCTTTGACTTGTAAAAGATTTCCATCTATTATTTTAGGCAGCTCTCCTCAAATAAAGTTGTATGATGAAACTGCTTGTTATTCTGAAACAAACAACCTTTTGGCAATCGAAAGTTATGAAAGCATTCTTTTGAACTCAACAAGTGAAAATAGGGCTCAAGACTGTTTAAATGGAACATTGGCTTCACAAGAAACATCTGGTGACCTAAATATGGTAGAGGAGTACTCACCAACAGTCACTCAGGGATCACAAAATAGTGGTGAGTTAATCCTCGACAAATGTGTCAGTTGCATTCCCGGACTAAGTAAGAGAATCTCAAGTCAGCTCGAAAATTGTGGCCTGCATACGTTGCGAAAATTGTTACACCATTTTCCGCGGACCTATGCTGATCTACAAAATGCGCAGATTGGAATCGATGATGGACAATACTTTATTTTCTTAGGAAAGGTTTTATCCTCAAGGGGAATTAGAGCTAGTTACTCGTTTTCATTTCTGGAGGTGATCGTTGGCTGTGAGATCAAAGATAAAGAATCAACTTCTGGGTGCTCAATAAGTGAAAATAAAAGGGTAAAGCAGACGATTTATTTACATCTGAAGAAATATTTTCGTGGTACACGTTTTACATTTCAGCCATTTCTTAAATCCATTCAAGAAAAGCATAAAGAAGGGGAAACTGTCTGTGTCAGTGGTAAGGTAAGAAAAATGCCTACTAAAGATCACTATGAAATGAGAGAGTATAGTATTGACGTGCTTGAAGATGAAAAGGATTTGTCTTGTCATGATAAGGAGAGGTTGTATCCCATTTACCCTTCAAAGGGACGACTAAATCCTGATTCACTTAGAGATATCATTTCCAGGTCAATAGAAGACTTACCTGCTAATATTGATCCCATTCCAGAAACAACTACTAAGGAATTTGGACTATTAAATCTTCGCGAGGCATATAGTGGAATTCATCAACCAAAGAGTATAACTGATGCAGATTGGGCTCGCAAAAGACTTATATTTGACGAGTTCTTCTACCTGCAGTTGGCAAGGTTATTCCAAATGCTGGAAGGTCTTGGTACTCAATTAGAGAAAGATAGTCTACTTGACAAGTTTAGCAAACCTCAACTAAATTCTGTATATATGAAGGGGTGGTCTGATCTCACGAAGAACTTTTTGAAGGCTCTTCCATATTCTCTTACTGAAAGTCAGCTCAACGCCGTTTCAGAAATTCTATGGGATTTAAAGCGACCAATCCCTATGAATCGGCTCTTGCAGGGTGATGTTGGATGTGGGAAGACAGTTGTAGCTTTTTCAGCCTGTATGGAAGTATTAGGTTCTGGATATCAGGCAGCATTTATGGTTCCAACAGAATTGCTTGCCATCCAGCATCACGAGCATTTTCTTAATTTGTTGAAGAATATGGGAGAGACTGAGATTAAACCTTCTGTTGCTTTACTAACAGGTTCAACCCCAGCAAAGCAGTCAAGGATGATTCGACAGGGACTACAAATGGGAGAGATTTCACTAGTCATAGGAACCCACAGTTTAATATCCGAAAATGTGGAGTTCTCTGCTTTACGCCTCTGTGTGGTGGATGAGCAACATCGTTTTGGTGTAATTCAGAGGGGCAGGTTTAACAGTAAGTTGTTCTTCAATTCTACAAGCTCAAGAATGACAAGTGGAAATTCTGATGGATCTTCAAAGGGTGATTTCCAAATGGCCCCTCACGTACTTGCTATGTCTGCCACTCCTATTCCGAGGACACTTGCTCTGGCTTTATATGGGGATATGTCCCTTACTGAAATAACTGACTTACCTCCTGGACGAACACCAGTAAAAACTTGTACTGTTGAAGGTACTGACAATGGCTTTGAGCAAGTCTACGAGATGATGTGGAAGGAGTTAGAAGAAGGGGGGAAGGTGTATCTTGTGTATCCAATCATTGAACAATCTGAGCAGCTGCCTCAACTTCGTGCAGCTTCGGCTGATTTTGAATCCATTTCTAAGAGATTTAAGGGATACAATTGTGGTTTATTACATGGAAGGATGAAGATTGATGAGAAAGAGGAAGCATTAGGAAAATTTAGAAATGGCCAAACACAAATTCTGCTCTCCACACAAGTTATCGAAATCGGCGTTGACGTGCCAGATGCATCCATGATGGTCGTTATGAATGCCGAGAGATTTGGAATCGCACAACTACACCAGCTTAGGGGACGAGTTGGACGTGGTGTGAAGAGTTCTAAATGCATATTTATAGCGGCTACTGCTGGCGGCCTAAATCGATTGAAGGTTGTTCTAGAAGATTCGTCGGATGCTTTTCACTTGGCGAATATTGATCTTATTTTACGGGGACCTGGCGATTTGCTTGGTAAGAAACAGTCAGGACATCTTCCCGAGTTTCCCATTGCACGATTGGAAATAGACGGGAATATTTTACAGGAAGCACATCTGGCAGCCTTGAAAATTTTGGGAGCTTCTCATGATTTGGAGCGATTTCCTGGCCTTAAAATGGAGCTTAGTATGAGGCAGCCTCTTTGCCTTTTAGGTGAT 2784 40.09 YRYNNILLAKIPKLCTRSKHNFTEKLLEVSNYGTGRITDQSNLLNKVPIVMGCNGLHGLIEDGNWKKHSGLTSAEGDDFDIALTCKRFPSIILGSSPQIKLYDETACYSETNNLLAIESYESILLNSTSENRAQDCLNGTLASQETSGDLNMVEEYSPTVTQGSQNSGELILDKCVSCIPGLSKRISSQLENCGLHTLRKLLHHFPRTYADLQNAQIGIDDGQYFIFLGKVLSSRGIRASYSFSFLEVIVGCEIKDKESTSGCSISENKRVKQTIYLHLKKYFRGTRFTFQPFLKSIQEKHKEGETVCVSGKVRKMPTKDHYEMREYSIDVLEDEKDLSCHDKERLYPIYPSKGRLNPDSLRDIISRSIEDLPANIDPIPETTTKEFGLLNLREAYSGIHQPKSITDADWARKRLIFDEFFYLQLARLFQMLEGLGTQLEKDSLLDKFSKPQLNSVYMKGWSDLTKNFLKALPYSLTESQLNAVSEILWDLKRPIPMNRLLQGDVGCGKTVVAFSACMEVLGSGYQAAFMVPTELLAIQHHEHFLNLLKNMGETEIKPSVALLTGSTPAKQSRMIRQGLQMGEISLVIGTHSLISENVEFSALRLCVVDEQHRFGVIQRGRFNSKLFFNSTSSRMTSGNSDGSSKGDFQMAPHVLAMSATPIPRTLALALYGDMSLTEITDLPPGRTPVKTCTVEGTDNGFEQVYEMMWKELEEGGKVYLVYPIIEQSEQLPQLRAASADFESISKRFKGYNCGLLHGRMKIDEKEEALGKFRNGQTQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGVKSSKCIFIAATAGGLNRLKVVLEDSSDAFHLANIDLILRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHLAALKILGASHDLERFPGLKMELSMRQPLCLLGD 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12118098 12135028 + Bpe024849 Bpe11g01604 111749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01604 928 SMART helicmild6 739 822 IPR001650 -
Bpe11g01604 928 SUPERFAMILY Nucleic acid-binding proteins 172 372 IPR012340 -
Bpe11g01604 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 683 IPR027417 -
Bpe11g01604 928 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 2 928 - -
Bpe11g01604 928 Gene3D - 689 861 IPR027417 -
Bpe11g01604 928 Pfam DEAD/DEAH box helicase 497 664 IPR011545 GO:0003676|GO:0005524
Bpe11g01604 928 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 490 679 IPR014001 -
Bpe11g01604 928 Pfam Helicase conserved C-terminal domain 702 821 IPR001650 -
Bpe11g01604 928 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 2 928 - -
Bpe11g01604 928 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 848 905 IPR045562 -
Bpe11g01604 928 CDD DEXHc_RecG 415 683 - -
Bpe11g01604 928 TIGRFAM recG: ATP-dependent DNA helicase RecG 193 896 IPR004609 GO:0003678|GO:0006281|GO:0006310
Bpe11g01604 928 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 832 IPR027417 -
Bpe11g01604 928 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 703 859 IPR001650 -
Bpe11g01604 928 SMART ultradead3 472 690 IPR014001 -
Bpe11g01604 928 Gene3D - 432 680 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01604 K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4] - csin:114290287 1288.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01463 Bpe-Chr11:10867170 Bpe11g01604 Bpe-Chr11:12118098 3.05E-16 dispersed
Bpe11g01604 Bpe-Chr11:12118098 Bpe10g00693 Bpe-Chr10:13402013 3.60E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g422 . . . . . . Bma14g01597 . . . . . . . . . . . . . . . . . Cla07g00622 Cam07g0642 . Cco07g0699 . Cmu07g0670 Cre07g1019 Cone13ag0764 . . . Lsi04g01153 . . Cme10g01515 . Blo11g00729 . . Bpe11g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006958 1 2 1 1 1 2 1 2 1 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01604 Bpe_Chr11 FPKM 2.887957 2.285064 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0