Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01607 AATCTAGTCTCCATGGAGATACCACCTCCATCACACCCCACGTATGATTTAAAAAGCAGCATCAAATTAGCACTTGCTGAGGATTCTGCTGATATTGGAGATGTAACATCTATGGCCACTATTCCGTATGACATGGAAGTGGAAGCCTATTTTTTGGCAAAGGAAGACGGTATTGTTGCTGGAATTGCTCTTGCAGAGATGGTTTTTCATGAAGTCGATCCTTCCATTAAGGTGGAATGGACTAAAAAGGATGGAGATTACATTTACAAAGGACTGCAGTTTGGAAAAGTTTCTGGCCGAGCACAAAACATTGTTAAGGCTGAAAGGATTGTGCTTAATTTTATGCAGAGAATGAGCGGAATTGCTACTCTAACCAAGGCAATGGCAGAAGCTGCATTTCCTGCACGAATGTTAGAAACTAGAAAAACTGCTCCGGGATTACGTTTGGTGGATAAGTGGGCGGTACTGATAGGTGGAGGCCAGAATCACAGACTGGGTTTATTCGATATGGTGTTGATAAAAGACAATCATATATCAATAGCAGGAGGCATAACAAATGCTATTAAATCTGTTGACTCATACCTACAACAAAACAACCTTAAAATGGAAGTCGAGGTTGAAACTAGAACACTTGAGGAAGTGAAAGAGGTGCTGAATTATGCATCTCAAACAAAGACATGCTTGACTAGGATAATGTTAGACAATATGGTAATTCCTTCATCTAATGGTGATGTGGACATAACCATGCTTAAAGAAGCTGTTGAAATAATTAATGGGAGATTCGAAACAGAGGCATCGGGTAATGTTACTTTGGAAACTGTGGGGAAAATTGGGCAAATTGGAGTGACCTACATATCTAGTGGTGCTCTGACTCATTCTGTAAAAGCGCTCGACATATCCCTCAAGATTGACACAGAGTTGGCCCTTCAAGTTGGCAGACGCACTAATCGAGCG 954 41.09 NLVSMEIPPPSHPTYDLKSSIKLALAEDSADIGDVTSMATIPYDMEVEAYFLAKEDGIVAGIALAEMVFHEVDPSIKVEWTKKDGDYIYKGLQFGKVSGRAQNIVKAERIVLNFMQRMSGIATLTKAMAEAAFPARMLETRKTAPGLRLVDKWAVLIGGGQNHRLGLFDMVLIKDNHISIAGGITNAIKSVDSYLQQNNLKMEVEVETRTLEEVKEVLNYASQTKTCLTRIMLDNMVIPSSNGDVDITMLKEAVEIINGRFETEASGNVTLETVGKIGQIGVTYISSGALTHSVKALDISLKIDTELALQVGRRTNRA 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12192178 12195407 + Bpe024850 Bpe11g01607 111752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01607 318 PANTHER NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] 12 312 - -
Bpe11g01607 318 PANTHER NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE [CARBOXYLATING] 12 312 IPR027277 -
Bpe11g01607 318 SUPERFAMILY Nicotinate/Quinolinate PRTase C-terminal domain-like 121 303 IPR036068 GO:0009435
Bpe11g01607 318 Pfam Quinolinate phosphoribosyl transferase, N-terminal domain 32 119 IPR022412 GO:0016763
Bpe11g01607 318 Pfam Quinolinate phosphoribosyl transferase, C-terminal domain 121 302 IPR002638 GO:0004514|GO:0009435
Bpe11g01607 318 PIRSF NadC_ModD 12 306 IPR027277 -
Bpe11g01607 318 CDD QPRTase 21 302 IPR004393 GO:0004514|GO:0009435
Bpe11g01607 318 Gene3D - 24 301 IPR037128 GO:0016763
Bpe11g01607 318 Gene3D Aldolase class I 133 293 IPR013785 -
Bpe11g01607 318 TIGRFAM nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 21 303 IPR004393 GO:0004514|GO:0009435
Bpe11g01607 318 SUPERFAMILY Nicotinate/Quinolinate PRTase N-terminal domain-like 8 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01607 K00767 nadC, QPRT; nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] - vvi:100250945 514.612
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01607 Bpe-Chr11:12192178 Bpe11g01664 Bpe-Chr11:12817201 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g415 . . . . . . Bma14g01593 . Cmo04g01079 . Cma04g01001 . Car04g00939 . . . . . . . . . . . Cla07g00598 Cam07g0626 Cec07g0692 Cco07g0672 Clacu07g0630 Cmu07g0656 Cre07g1003 Cone13ag0769 . . . Lsi04g01137 . . Cme10g01500 . Blo11g00734 . . Bpe11g01607 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01042 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003846 2 3 1 1 2 2 1 2 2 0 2 1 1 1 1 1 2 1 1 2 1 1 1 1 0 1 1 6 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01607 Bpe_Chr11 FPKM 3.265304 3.826425 4.23012 4.578645 0.0 1.382785 1.775595 4.461763 4.461586 6.223599