Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01608 ATGGGTAACAGCATTGCAGGAAAAAGAAGAGTGAAAGTGATGAAGATAAACGGAGAAACAATGAAAGTAGAATCAGGAACAGAAGCTGGAGAGATAACCAAAACCCATCCTAACCACGTCGTCTTAGAATCAGAAGCAGTAAAGCATTTCGGCATTAGAGCGCCGCCATTGAAACCAGACCAAAAGCTTGACCCAAAGAAACTCTATTTTCTCTTAGAATTACCACCCCAAATCCAGGACCAAAAACTCGCCAGAAGAGTTCGATCCAACGTAACCATGAGCGCCAAAGACAGGCTGGAGAGCCTCATGCTGGCGAGAAGGTCGTCTTCGGACCTTTGCGTCTTGAAGAAGACGAGCGGTTCAGGGGAGGACGACGACCTGGAAGGAAGCGTGAGAGTGAGGATGAGGCTTCGGAGAAGAGAAGTGGAGAAGTTGATGAGGGAGAGCGGAAACGAAGACGAAGCGGCTGAGAAGCTCACGAGTCTTTGCATGGAGAAATTTCGAAACGGCGGGGATGAAGTTGCAGAAAATGGCAGCCATGTGAGAGCTCCACCATGTTTCAAACCTCGTCAGGTTAGTAATACACCTTTTTTACCCTTTAATTTCACCTTTTTCTCCAATCTCATAATATAA 633 46.6 MGNSIAGKRRVKVMKINGETMKVESGTEAGEITKTHPNHVVLESEAVKHFGIRAPPLKPDQKLDPKKLYFLLELPPQIQDQKLARRVRSNVTMSAKDRLESLMLARRSSSDLCVLKKTSGSGEDDDLEGSVRVRMRLRRREVEKLMRESGNEDEAAEKLTSLCMEKFRNGGDEVAENGSHVRAPPCFKPRQVSNTPFLPFNFTFFSNLII 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12197795 12198427 - Bpe004925.1 Bpe11g01608 111753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01608 210 Pfam PADRE domain 1 147 IPR025322 -
Bpe11g01608 210 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN 1 168 - -
Bpe11g01608 210 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED 1 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01608 - - - sind:105160136 179.874
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00992 Bpe11g01608 CCT
Bpe10g00992 Bpe11g01608 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00011 Bpe-Chr11:84119 Bpe11g01608 Bpe-Chr11:12197795 4.68E-45 dispersed
Bpe11g01229 Bpe-Chr11:9187898 Bpe11g01608 Bpe-Chr11:12197795 5.24E-42 dispersed
Bpe10g00992 Bpe-Chr10:15330865 Bpe11g01608 Bpe-Chr11:12197795 5.26E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g413 . . . . . Bpe10g00992 . . Cmo04g01076 . Cma04g00998 . Car04g00937 Car04g00054 . . . . . . . . . . Cla07g00603 Cam07g0629 Cec07g0694 Cco07g0679 Clacu07g0634 Cmu07g0659 Cre07g1007 Cone13ag0772 Cone19ag0774 . . Lsi04g01142 . . Cme10g01505 . . . . Bpe11g01608 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01045 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006957 2 1 0 1 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01608 Bpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0