Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01609 ATGGCCGGTGGAGTGGCCGACGACGGAGAGAGTACTCCCGGACTACTGTTGATTGACCTTCTTCAAGACGTTATCGGTACCTCGGCTGGGACAGTCTCCAGCGACATGTTCAAGAAGGACTGTACCGATCTGGTGCGTCGGATCGCTCTCTTAAGCCACTTGTTTGAAGAGATTAGGGATTTGAAGATGGCCGGTGAATCTGGAGCTCCCGATGCGTCGACTTCGTTGGCTTCCTCGTCGAAAACCGGTAGTGGGAATAAGCTCTCCTGGCTATCGGATCTGGTTTTAGCTCTGAAGGCTGCCAAGCGACTTCTTTTCGTTGCGCGTACTTTCATTTCCGGCAATGGCTCTTCTGATGGAGCTGCCAAGAAAATAGCATTCCAATTTGAGTGTGTTACATGGAAGTTAGAGAAAGCATTGGGAAACATACCATTTGATCGATTTGACATCTCAGAGGAAGTTCAAGAGCAGGTTGAGTTGGTAAGAGCACAATTGAGAAGAGCTGCCAAAAAGTATGGATCACCACCCTCAGTTACACAATCTGTTCTCTCTCAGGACAGAGAAATAAGCATCTTATTATCAGAGCATTTGTCAAACGATGTGTCTTTTGAGAATTCGGATAGTATAGATGATGACATTACTGTGAAGATGGATACTTTTTGCGACAGCAGTACTTTGATCAGCCATAGTAATGAACAGAGAACTCAATTGTTGGAAAGAACGAGGAATGTTTCTACTTCAGAGGTATCTTCAAATGATGCTAATGCTGAAGGTCCTGACAACTCAGTAAATGAGAGTGCAGATGAGAACAAGAAGTCTGATGCAAATATTATACCTGACGATTTTTTATGCCCCATATCTCTAGAATTAATGAGAGACCCTGTTATTGTGTCCACAGGACAGCTTGATTTTGACATCTATTTTTTCTTCTGTCTGCAGACGTATGAAAGATCCTACATTCAAAGATGGATAGATTGTGGCAACTCAACATGTCCAAAAACCCAGCAGAAGCTTCAAAATTTAACTCTTACCCCGAATTACGTTCTGAGAAGTCTCATCTCTCAATGGTGCCTGAAGCACAATATTGAACAACCAACAGGTTTAACCAATGGAAAAATCAAAAAGTTTGATGGAACATATCGTGATGTTTGTGCTGAAATAGCAGCCATTGAAGCTCTGGTTCGCAAACTCTCAGGCCATTCCCTTGAGGAGCAGAGAGCAGCAGTAACTGAACTCCGATCTCTATCCAAAAGAAGTACAGATAACAGAATACTAATAGCAGAAGCTGGAGCCATTCCAGCTCTAGTCAACCTTTTAACGTCAGACGATGTCTTAATACAAGAGAATGCAGTCACTTCTATCCTTAACCTTTCGATATATGAAAACAACAAAGGACTCATCATGCTAGCTGGGGCTGTTCCTTCTATTGTCCAGGTTCTTAGGATGGGAAGCATGGAAGCTAGAGAGAATGCAGCGGCTACTCTCTTCAGCCTCTCTCTTGCGGATGAAAACCGGATAATAATTGGCGCATCTGGGGCAATCCCAGCATTGGTAGAATTGCTTCAAAACGGGAGCACGAGAGGTAAGAAAGATGCAGCCACAGCTCTATTCAATTTATGCATTTACCAGGGCAACAAAGGTCGAGCTGTAAGGGCCGGAATTGTCTCAGCCCTGTTGAAGATGCTTACAGACTCAAATTCATGCATGGTCGATGAGGCTCTTACAATAATGTCTGTTCTTGCCAATCATCAAGAAGCAAAAGTTGCCATTGTAAAAGCCAGCACCATACCAGTTTTGATTGATCTGGTGAGGACGAGTTTGCCTCGTAATAAAGAAAATTCTGCTGCCATTTTACTTGCGTTGTGTAAGAGAGATTCCGAAAATCTTGCATGTATCAGTAGGCTTGGAGCCATAATACCACTAACCGAACTTGCAAGAAGTGGCTCGGAAAGAGCAAAAAGGAAAGCTAATTCATTGCTGGAGCATCTTCGAAAAATACAGCAGCATTAG 2010 43.38 MAGGVADDGESTPGLLLIDLLQDVIGTSAGTVSSDMFKKDCTDLVRRIALLSHLFEEIRDLKMAGESGAPDASTSLASSSKTGSGNKLSWLSDLVLALKAAKRLLFVARTFISGNGSSDGAAKKIAFQFECVTWKLEKALGNIPFDRFDISEEVQEQVELVRAQLRRAAKKYGSPPSVTQSVLSQDREISILLSEHLSNDVSFENSDSIDDDITVKMDTFCDSSTLISHSNEQRTQLLERTRNVSTSEVSSNDANAEGPDNSVNESADENKKSDANIIPDDFLCPISLELMRDPVIVSTGQLDFDIYFFFCLQTYERSYIQRWIDCGNSTCPKTQQKLQNLTLTPNYVLRSLISQWCLKHNIEQPTGLTNGKIKKFDGTYRDVCAEIAAIEALVRKLSGHSLEEQRAAVTELRSLSKRSTDNRILIAEAGAIPALVNLLTSDDVLIQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRMGSMEARENAAATLFSLSLADENRIIIGASGAIPALVELLQNGSTRGKKDAATALFNLCIYQGNKGRAVRAGIVSALLKMLTDSNSCMVDEALTIMSVLANHQEAKVAIVKASTIPVLIDLVRTSLPRNKENSAAILLALCKRDSENLACISRLGAIIPLTELARSGSERAKRKANSLLEHLRKIQQH 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12206034 12209408 - Bpe004926.1 Bpe11g01609 111754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01609 669 CDD RING-Ubox_PUB 282 336 IPR045210 -
Bpe11g01609 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515
Bpe11g01609 669 MobiDBLite consensus disorder prediction 231 263 - -
Bpe11g01609 669 SUPERFAMILY ARM repeat 384 663 IPR016024 -
Bpe11g01609 669 SMART arm_5 625 665 IPR000225 GO:0005515
Bpe11g01609 669 SMART arm_5 583 623 IPR000225 GO:0005515
Bpe11g01609 669 SMART arm_5 501 541 IPR000225 GO:0005515
Bpe11g01609 669 SMART arm_5 542 582 IPR000225 GO:0005515
Bpe11g01609 669 SMART arm_5 419 459 IPR000225 GO:0005515
Bpe11g01609 669 SMART arm_5 460 500 IPR000225 GO:0005515
Bpe11g01609 669 MobiDBLite consensus disorder prediction 231 273 - -
Bpe11g01609 669 SUPERFAMILY RING/U-box 276 364 - -
Bpe11g01609 669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 360 IPR013083 -
Bpe11g01609 669 ProSiteProfiles U-box domain profile. 277 363 IPR003613 GO:0004842|GO:0016567
Bpe11g01609 669 Gene3D - 568 669 IPR011989 -
Bpe11g01609 669 Gene3D - 361 464 IPR011989 -
Bpe11g01609 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Bpe11g01609 669 SMART Ubox_2 281 356 IPR003613 GO:0004842|GO:0016567
Bpe11g01609 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 430 472 IPR000225 GO:0005515
Bpe11g01609 669 Coils Coil 151 171 - -
Bpe11g01609 669 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 22 666 - -
Bpe11g01609 669 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 512 554 IPR000225 GO:0005515
Bpe11g01609 669 Pfam U-box domain 278 361 IPR003613 GO:0004842|GO:0016567
Bpe11g01609 669 Pfam Armadillo/beta-catenin-like repeat 502 540 IPR000225 GO:0005515
Bpe11g01609 669 Pfam Armadillo/beta-catenin-like repeat 420 458 IPR000225 GO:0005515
Bpe11g01609 669 MobiDBLite consensus disorder prediction 71 85 - -
Bpe11g01609 669 PANTHER U BOX DOMAIN-CONTAINING 22 666 - -
Bpe11g01609 669 MobiDBLite consensus disorder prediction 66 85 - -
Bpe11g01609 669 Gene3D - 465 567 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe10g00993 Bpe11g01609 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01367 Bpe-Chr8:14743875 Bpe11g01609 Bpe-Chr11:12206034 1.29E-158 dispersed
Bpe10g00993 Bpe-Chr10:15332923 Bpe11g01609 Bpe-Chr11:12206034 0 dispersed
Bpe13g00261 Bpe-Chr13:10558950 Bpe11g01609 Bpe-Chr11:12206034 2.77E-35 dispersed
Bpe11g01609 Bpe-Chr11:12206034 Bpe11g00764 Bpe-Chr11:5755923 5.46E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01609 - - csv:101221534 880.552