Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01615 ATGGCGGGGTTTGGGGGGCAAATAGTGGGTCAGATGCTGACAGGCTTTGGCGGCAACGGTGTTGGCCAGATACTGCTGGCCGTTACTGCTGCTTTTCTCGTCCGTCTCTTCTCTGGACCTGGACCAGCTTCTCCGCCAGAGGATGAGGATGAGGTCGAGGTCGTTGAAAACGAGGACGATGGAGTTGAAATTCCTGTTTCCGCCCAGGTTTATCCGGTGGCTATGCGGTGGCGAAACATCACCTGTGCTCTCTCTGACAAATCCTCCACATCAGTGAGATTCTTACTCAGAAATGTCACTGGAGAGGCGAAACCAGGACGACTGCTGGCAATAATGGGCCCATCAGGGTCTGGAAAAACAACACTGCTCACTGTTCTTTCTGGTCAACTAACAGCGTCGTTACGCTTACATTTATCGGGCATTTTAGAGTTCAATGGAAGGCCTAGTTCAAAGAGAGATTATAAATTTGCTTTTGTGAGACAGGAAGACCTTTTCTTCTCACAGCTGACCGTTCGAGAAACATTATCACTGGCTGCTGAATTGCAGCTTCCCGAATTATATTCCTTGGAAAAGAGGGATGAATATGTGAAAAATCTACTCTTCAAGATGGGTTTGGTTAGCTGTGCTGAGACCATTGTTGGTGATGCAAAAGTTAGAGGCATTAGTGGGGGCGAGAAAAAACGATTATCTCTAGCTTGCGAGCTGATAGCTAGCCCATCTATCATATTTGCTGATGAACCCACGACCGGATTGGATGCTTTCCAGGCAGAAAAAGTAATGGAAACTCTCAAGCAACTTGCACAGGATGGACATACTGTTATCTGCTCAATACATCAGCCTAGAAGCTCTGTTTATGCTAAATTTGATGACCTAGTATTGCTGACCAGGGGCGCCCTTATTTATGCTGGTCCTGCCCAAAACGAGCCGCTATCATATTTCTCCAAATTTGGGTACCAGTGCCCAAATCATGTGAATCCTGCTGAATTTTTGGCTGATCTCATATCTATTGACTACAGTTCTGCAGACAGTGAATATTCCTCTCAGAAAAGGATTGATGGTCTTGTTGAGGCATTCTCAATGAGGTCAAAAGAAGTTTTATATGTCATGCCGATTAATGGAAGTAAGAGTTTAAAGAATGATACGAAATTCAGCAGGAAAGGCTTCGCCAAGAAGGGAGGTTGGTGGAGGCAATTTTATTTACTGCTAAAGCGTGCATGGATGCAGGCTTTTCGTGATGGACCAACAAACAAAGTTCGAGCCAGAATGTCCATAGCTTCGGCTGTAATATTTGGGTCTGTGTTTTGGAGAATGGGAAGATCTCAAACATCTATACAAGATAGAATGGGATTGCTTCAGGTGGCTGCAATTAACACAGCAATGGCTGCTCTCACCAAAACTGTGGGTGTTTTCCCCAAGGAGCGTACAATTGTCGAAAGAGAGCGTGCAAAAGGGTCTTATACCTTAGGACCTTACCTGCTTTCAAAATTGTTGGCTGAGATTCCTGTTGGAGCAGCATTTCCACTAATGTTTGGGGCTGTTTTGTATCCCATGGCCCGTCTTCATCCATCATTATCCAGATTTGGGAAGTTTTGTGGTATTGTCACGGTAGAATCTTTTGCTGCATCTGCCATGGGTCTAACTGTTGGGGCATTGGTTCCAACCACCGAAGCAGCAATGGCAGTGGGACCATCCCTTATGACAGTTTTTATTGTATTTGGAGGCTATTACGTAAACGAACATAACACCCCTATTGTCTTTCGTTGGATACCTCATGTTTCTCTAATAAAATGGGCTTTTCAAGGACTTTGCCTTAATGAATTTAGTGGTCTTCAATTTGAACATCAACATTCGTTTGACATTCAAACTGGAGAACAGGCCCTTGAGCGCCTCTCCTTTGGCAAAAGTGGCATAAGGAAAACAATAATAGCTCAAAGTAGAATACTTTTCTTCTGGTATTGCACCACTTACCTTCTTCTTGAGAAAAACAGGCCTAGATATCAACCGCTTGAACCTCCCCTTAATGTTGAAATTGAGCCTCTTGAAGAGTACGAGCTAGTGAGTACTGAGAAATTTGAAATAGAGCAACTAAAAGAACCCTCGTCTGTAAACCAACCCGAATCAAGCGAGATGCTCGATATGCCCGCTGTAGATCAAATCCAGCCGTTTATTCTCGAAGGTTTGTGA 2184 44.37 MAGFGGQIVGQMLTGFGGNGVGQILLAVTAAFLVRLFSGPGPASPPEDEDEVEVVENEDDGVEIPVSAQVYPVAMRWRNITCALSDKSSTSVRFLLRNVTGEAKPGRLLAIMGPSGSGKTTLLTVLSGQLTASLRLHLSGILEFNGRPSSKRDYKFAFVRQEDLFFSQLTVRETLSLAAELQLPELYSLEKRDEYVKNLLFKMGLVSCAETIVGDAKVRGISGGEKKRLSLACELIASPSIIFADEPTTGLDAFQAEKVMETLKQLAQDGHTVICSIHQPRSSVYAKFDDLVLLTRGALIYAGPAQNEPLSYFSKFGYQCPNHVNPAEFLADLISIDYSSADSEYSSQKRIDGLVEAFSMRSKEVLYVMPINGSKSLKNDTKFSRKGFAKKGGWWRQFYLLLKRAWMQAFRDGPTNKVRARMSIASAVIFGSVFWRMGRSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERTIVERERAKGSYTLGPYLLSKLLAEIPVGAAFPLMFGAVLYPMARLHPSLSRFGKFCGIVTVESFAASAMGLTVGALVPTTEAAMAVGPSLMTVFIVFGGYYVNEHNTPIVFRWIPHVSLIKWAFQGLCLNEFSGLQFEHQHSFDIQTGEQALERLSFGKSGIRKTIIAQSRILFFWYCTTYLLLEKNRPRYQPLEPPLNVEIEPLEEYELVSTEKFEIEQLKEPSSVNQPESSEMLDMPAVDQIQPFILEGL 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12272042 12281252 + Bpe004931.1 Bpe11g01615 111760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01615 727 CDD ABCG_EPDR 72 303 - -
Bpe11g01615 727 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524
Bpe11g01615 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 307 IPR027417 -
Bpe11g01615 727 Pfam ABC transporter 96 248 IPR003439 GO:0005524
Bpe11g01615 727 PANTHER ABC TRANSPORTER G FAMILY MEMBER 7 1 675 - -
Bpe11g01615 727 Pfam ABC-2 type transporter 396 607 IPR013525 GO:0016020|GO:0140359
Bpe11g01615 727 PANTHER ATP-BINDING CASSETTE TRANSPORTER 1 675 - -
Bpe11g01615 727 Pfam ABC-2 type transporter 278 335 IPR043926 GO:0140359
Bpe11g01615 727 Gene3D - 72 310 IPR027417 -
Bpe11g01615 727 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 321 IPR003439 GO:0005524
Bpe11g01615 727 SMART AAA_5 105 298 IPR003593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01615 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - zju:107429383 1112.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01615 Bpe-Chr11:12272042 Bpe09g00218 Bpe-Chr9:1540068 1.58E-88 dispersed
Bpe15g00010 Bpe-Chr15:1540043 Bpe11g01615 Bpe-Chr11:12272042 5.16E-74 dispersed
Bpe11g01615 Bpe-Chr11:12272042 Bpe01g00322 Bpe-Chr1:1986083 2.69E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g402 . . . . . . . . Cmo04g01536 Cmo18g00981 . . Car04g01524 Car18g00896 . Cpe09g00340 Cpe01g01308 Bhi07g01235 . . . Hepe01g1135 . . Cla05g02253 Cam05g2419 Cec05g2436 Cco05g2481 Clacu05g2408 Cmu05g2274 Cre05g2392 Cone13ag0777 Cone19ag0780 . . Lsi04g00196 Csa05g02673 Chy10g01202 Cme10g00198 . Blo11g00741 Bda07g01446 . Bpe11g01615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005825 2 2 2 0 1 2 2 1 1 1 1 1 1 1 1 2 1 2 2 2 1 0 1 1 1 0 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01615 Bpe_Chr11 FPKM 55.563782 72.098686 28.61256 25.139282 1.222274 1.732251 0.891451 0.0 0.0 0.131191