Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01616 ATGGATTACGAGAGGATCCTGAAGCCTCAGGGAAGTGTTGGAGGTGGATTCTCACCAGGGAAACTGAGGACCATGATACTGGGCTTAGAGAAGAAAAGGAAAGAGGAAGGAGAGGAGCTTGAATCACCCTACACATCTAGATCTCAGATTTCTCAGATTGAGGAAGCAGGTGGTAGCAGTAACGATAATTACAAAGATGTAGATATGGTTAGTATTATGTCGGAATGCTCGGTTTCAAAAACAGCTGGATCATTAGGCTCAGAGGCGTTTAATGACAATAGATCGAAGGATGTCACAGTAGGAAATTCAAGAATTAAAAACCAAGAAGATCCTACTTTAGATTATGATTGCGGTCTGGATATTGCAAATTTACCTTTGTCAGCCTTTGAGTTTCAGAAGGGAGAGAGGTCTTCAAGAGTCCCGTTGGCACCTTTCTCTAAGCCAGCACCATCCAAATGGGATGATGCCCAAAAATGGATAGCTAGTCCAACTTCAAACAGGCCAAAGGCTGGGCAGTCTCAGGGGCAAGTTGTTGGATCACGAAAGGTTAGTAGTGTTGGTTATGCAATTCGACATCCGTCCGCAAAGGTTGTTGTCGAAGTTCCTGATCAAAAGGGGGTGGCTTTTGAAGAACCAGACACCAAACAGATGGATACCAACCAAACCAAGTTGGAAAGAGATGGTCAGAAGTTTGCTAGTTGGGAAGATCACGCTCATCCATGTCCAACCGGAGATTCATATTCTAAGCCTGTGCCCATGATTGAAAACTCCATCGGAGAGTGTGCCGTAAATGTTAGCCGCTACAATACATCTGTGGGCATCCAGAGTGCAACTACTTTAATTCCCCCTCCTTCGACAGCTCGATCGGTATCAATGAGAGATATGGGTACGGAAATGACCCCTATTGCTAGCCAAGAACCTTCAAGAACTGGAACTCCTGTGAGGGCGACAACACCAATGCGCAGTCCTACTTCTTCTCGACCATCAACTCCTGAGAGGTCTGCACCATCTTCGACTCCCATAAATCCTCCTTTACTTAATGACCAGGTGATTCCTAATAAGGAGTTGTCTGAGAAGGAGCTGCAACTTAAAACAAGGAGGGAGATTATGGTTTTAGGCACACAATTAGGAAAAATGAATATTGCTGCATGGGCTAGCAAAGAGGAGGAAGATAAGGATGCATCTACTTCACTAAAAACTATTGCAACACCACAGCTGAATAAAAGTGTGATCGAGACACGTGCAGCAGCATGGGAGGAGGCTGAGAAAGCCAAGTATACGGCAAGGTTCAAGCGTGAAGAAATGAAAATTCAAGCATGGGAAAATCACCAGAAAGCAAAAGCAGAGGCTGAAATGAAGAAAATGGAGGTAGAGGTAGAGAGGATTAGGGGGCGAGCTCAAGATAAGCTTATGAATAAATTAGCATCAGTGAGGCACAAAGCAGAAGAAAAGAGAGCTAATGCGGAAGCAAAGAGAAGCCGAGAAGCTGTAAAAACCGAGCAACAAGTAGATTACATTCGCAGGACAGGACGCATTCCTTCTGGATGCTCCTGCTGTTGGTGA 1563 44.85 MDYERILKPQGSVGGGFSPGKLRTMILGLEKKRKEEGEELESPYTSRSQISQIEEAGGSSNDNYKDVDMVSIMSECSVSKTAGSLGSEAFNDNRSKDVTVGNSRIKNQEDPTLDYDCGLDIANLPLSAFEFQKGERSSRVPLAPFSKPAPSKWDDAQKWIASPTSNRPKAGQSQGQVVGSRKVSSVGYAIRHPSAKVVVEVPDQKGVAFEEPDTKQMDTNQTKLERDGQKFASWEDHAHPCPTGDSYSKPVPMIENSIGECAVNVSRYNTSVGIQSATTLIPPPSTARSVSMRDMGTEMTPIASQEPSRTGTPVRATTPMRSPTSSRPSTPERSAPSSTPINPPLLNDQVIPNKELSEKELQLKTRREIMVLGTQLGKMNIAAWASKEEEDKDASTSLKTIATPQLNKSVIETRAAAWEEAEKAKYTARFKREEMKIQAWENHQKAKAEAEMKKMEVEVERIRGRAQDKLMNKLASVRHKAEEKRANAEAKRSREAVKTEQQVDYIRRTGRIPSGCSCCW 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12299737 12303868 - Bpe004933.1 Bpe11g01616 111761

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01616 520 Coils Coil 445 465 - -
Bpe11g01616 520 MobiDBLite consensus disorder prediction 476 498 - -
Bpe11g01616 520 Pfam Remorin, C-terminal region 411 514 IPR005516 -
Bpe11g01616 520 MobiDBLite consensus disorder prediction 1 20 - -
Bpe11g01616 520 Coils Coil 467 500 - -
Bpe11g01616 520 PANTHER OS02G0116800 PROTEIN 15 518 - -
Bpe11g01616 520 MobiDBLite consensus disorder prediction 43 64 - -
Bpe11g01616 520 PANTHER OS02G0116800 PROTEIN 15 518 - -
Bpe11g01616 520 MobiDBLite consensus disorder prediction 299 349 - -
Bpe11g01616 520 MobiDBLite consensus disorder prediction 301 346 - -
Bpe11g01616 520 MobiDBLite consensus disorder prediction 31 64 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01616 - - - zju:107429597 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00818 Bpe-Chr6:18335040 Bpe11g01616 Bpe-Chr11:12299737 7.45E-25 dispersed
Bpe10g00718 Bpe-Chr10:13573613 Bpe11g01616 Bpe-Chr11:12299737 1.09E-30 dispersed
Bpe13g00954 Bpe-Chr13:15426654 Bpe11g01616 Bpe-Chr11:12299737 2.23E-12 dispersed
Bpe01g00840 Bpe-Chr1:15564873 Bpe11g01616 Bpe-Chr11:12299737 2.84E-74 transposed
Bpe05g00024 Bpe-Chr5:520592 Bpe11g01616 Bpe-Chr11:12299737 8.62E-19 transposed
Bpe06g00191 Bpe-Chr6:6084007 Bpe11g01616 Bpe-Chr11:12299737 9.85E-14 transposed
Bpe08g00620 Bpe-Chr8:5087046 Bpe11g01616 Bpe-Chr11:12299737 7.08E-68 transposed
Bpe10g00782 Bpe-Chr10:13991697 Bpe11g01616 Bpe-Chr11:12299737 5.76E-50 transposed
Bpe10g00976 Bpe-Chr10:15229973 Bpe11g01616 Bpe-Chr11:12299737 1.03E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1078 . . . . . . Bma14g01623 Bma15g00051 . . . . . . . . . Bhi07g00089 . . . . . . . . . . . . . Cone13ag0667 Cone19ag0663 . . . . . Cme10g01363 . . . . Bpe11g01616 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00962 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009661 2 1 2 3 1 1 1 0 1 1 1 1 0 1 1 0 1 2 0 1 2 1 1 1 1 0 0 1 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01616 Bpe_Chr11 FPKM 68.93071 73.712311 25.464462 26.314165 1.531289 0.916366 2.274358 0.0 0.0 0.0