Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01617 ATGGAGAATATCACCGGAAATGTGGTACGGTCGACGGTGATGGCGCACAGGATGATCAACGGATCCTCATGGTGGGAAGACATCAACGATTCTCGTGTTTGGCAGGACCGTATATTTCATGTTCTCGCTGTTCTTTATGCCTTAGTGGCTGCTGTTGCTTTCGTTCAATTGGTGCGGATACAACTCAGGGTACCTGAATATGGTTGGACCACTCAGAAGGTCTTCCACTTTCTCAATTTTTTGGTTAATGGAGTACGATCTGTGGTTTTTATATTTCGCCGCAACATTCAGAAGTTAGAACCTCAGGCAGGATTTGATTGTCTAATCATTTTACTTGGACGTATGTCTATTGTTCAGCATATCTTGCTTGATATGCCAAGCCTTGCTTTCTTCACAACTTATGCTCTGTTGGTTCTGTTCTGGGCAGAGATTTACTATCAGGCCCGTGCTGTTTCTACTGATGGGCTGAGGCCAACTTTCTACAGCATAAATGCAGTGGTTTATGTTGTCCAGTTTGTTCTATGGTTGGTATTGTGGTGGAAACCACTCCCTTTGTTGGTCATCCTTTCGAAGATATTTTTTGCAGGTGTGTCTTTGTTCGCTGCCCTTGGGTTTCTACTTTATGGTGGAAGACTCTTCTTGATGTTGCAGCGATTCCCAGTAGAATCTAAAGGAAGGCGGAAGAAGTTGCAAGAGGTCGGCTATGTCACCACTATATGCTTTTGTTGTTTCCTTGTAAGATGCGTTATGATGTGCTTTAACGCTTTTGATAAAGCTGCGGATCTTGATGTTTTGAATCATCCAGTGCTAAACTTTATTTATTATCTCTTGGCGGAGATCCTACCTTCTTCTTTAGTCCTCTTCATATTAAGGAAGTTACCTCCTAGGCGTGGGATCACTCAATATCATCCTATACGC 918 43.03 MENITGNVVRSTVMAHRMINGSSWWEDINDSRVWQDRIFHVLAVLYALVAAVAFVQLVRIQLRVPEYGWTTQKVFHFLNFLVNGVRSVVFIFRRNIQKLEPQAGFDCLIILLGRMSIVQHILLDMPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPTFYSINAVVYVVQFVLWLVLWWKPLPLLVILSKIFFAGVSLFAALGFLLYGGRLFLMLQRFPVESKGRRKKLQEVGYVTTICFCCFLVRCVMMCFNAFDKAADLDVLNHPVLNFIYYLLAEILPSSLVLFILRKLPPRRGITQYHPIR 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12308888 12316796 + Bpe024852 Bpe11g01617 111762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01617 306 Pfam THH1/TOM1/TOM3 domain 22 306 IPR009457 -
Bpe11g01617 306 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 3 10 306 - -
Bpe11g01617 306 PANTHER TOBAMOVIRUS MULTIPLICATION PROTEIN 1-LIKE ISOFORM X1 10 306 IPR040226 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01617 - - - nnu:104592725 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00403 Bpe-Chr3:19686505 Bpe11g01617 Bpe-Chr11:12308888 1.04E-113 transposed
Bpe10g00975 Bpe-Chr10:15216793 Bpe11g01617 Bpe-Chr11:12308888 0 wgd
Bpe11g01617 Bpe-Chr11:12308888 Bpe02g00969 Bpe-Chr2:9085770 9.00E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1077 . . Bda01g02198 . . . Bma14g01624 . Cmo04g01053 . . . Car04g00918 . . . . Bhi07g00090 . . . . . . . . . . . . . Cone13ag0666 . . . . . . Cme10g01366 . . . . Bpe11g01617 . Bma01g00029 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00964 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007319 0 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 3 1 1 1 1 0 0 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01617 Bpe_Chr11 FPKM 5.500837 6.174499 9.565944 9.680842 7.081414 8.259657 9.407637 23.63389 22.003376 24.179525