Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01618 ATGATTTCGGCGACCTTCAATTTACCTGCGATTCAGCTGCTTGACATGTCTCAGAACTACTTGTCCGGGTCCCTTCCTCCTGATTTTTGCCATAACTCTTCCAGAATTAGGGTTTTAGATCTTGGTTTCAACTCTCTCTCTGGCAGTCTTTCTCCGGGACTGGGCAATTGCGCCTCCTTAGAAACACTCTCTCTGGAGAATAATAACCTAACAGGCGACATTCCCGACGACCTGTTCCGGATGCAAAAACTGATGATTTTGAGACTTCGAGACAACCTGCTTTCAGGAAAGCTGAGCAAGCTTATTGGTAATCTTTCAAACCTTGTTCGTCTGGATATTGCTTCCAATAGATTTTCTGGAGAAATTCCAGATGTGTTTCACACTGCCAAAAAATTGGAGTTCTTAGTTGCTGAATCCAACAATTTCACTGGTCAGATACCAAAATCGTTATCTAACTCTCCTACGTTAAATCTTCTGAATTTGAGGAACAATTCTCTGACGGGTCCCATTAATATCAACTGCTCTGCCATGGCGAACCTGACCTCTCTTGATTTGGGTACCAACTGGTTTTACGGCCCATTGCCGAGCAATCTTCCGTCTTGTCGATTGCTCAAGAACATAAATCTTGCACGAAATAACTTCGGTGGAGAAGTCCCTGTAACCTTCAAGAACTTTCAGCGCCTTTCTTATCTTTCACTGTCGAATTCGAGCATCATCAATCTCCACTCTGCACTTCAAATCTTGCAGCAGTGCAAGAGCTTGAGTACTTTGGTCCTGACCTTGAACTTCCATAATGAAGAGCTGCCTTCGGATCCTTCTCTCAATTTCGAAAATCTGAAGGTTTTCATCATAGCCAGTTGCAAACTGAAGGGTTTAATGCCCCAATGGTTGAGGAAGAGTTCAAAACTGCAGTTATTGGATTTGTCGTGGAACAGACTCGGCGGAACGATCCCACAATGGTTCGGAGATTTTCAGCTTCTGTTTTACTTGGATTTATCGAACAACTCATTTACAGGAGAGATTCCAGTGACCATAACTGGATTACAGAGCCTTATAAATAAAACCATTTCCTTCGAGGAACCTTCCCCAGATTTCCCATTTTTTATGAAGAGAAATGTCAGTGGACCATTGAAGTACACTCAAGTGTTGAGTTTTCCTCCCACCCTGGAGCTTAGCAACAATAATCTTAGTGGACCAATCTGGCGTGAATTTGGGAATCTGAGGAAGCTCCATGTTTTGATTCTGAAATTCAATAATCTTTCAGGAGAAATTCCGAGCTGTTTATCAGAGATGGCTAGCCTCGAGACATTGGATTTGTCCCATAATAAGCTTACTGGAACAATACCACAATCATTAGTGAGTCTCAGTTTCTTGTCTAAGTTCAGTGTTGCTTACAATCAGTTGAGTGGGGTGGTTCCTACGGGTGGTCAGTTTCCAACCTTCCCTAATTCAAGCTTTGTTGGAAATAATCTTTGTGGCGATCATGCTTCTCCTTGTTCTTCAAATGATCAAAGCTCGTTTGAATCTCCTGAAAAATCAGGACGAAGCCGAGGAAGTATAATTGGTGAGGCTGTTGGGATTTCGTTTGGAACAGCTTTCGTTCTTAGTCTTTTGATTCTGATTGTGCTTCGGACATGTAACCGCAGAGGCATTGATCTTGAAAGAGACATGTCTAACACTGATGATAAAAATTTAGAGGAGCTCGAATCAAGACTAGTCGTTATGTTCCAAAACAAAGATGACAATAAAGGGATCACGATTGACGATCTTTTGAAATCGACCAACAACTTTGACCAGGCAAACATAATTGGGTGTGGAGGTTTTGGCCTCGTTTACAAAGCCACGCTTCTAGATGGTAAGAGAGTCGCGATCAAACGGCTCTCAGGTGATTGTGGGCAAATAGAAAGAGAGTTTCGGGCAGAAGTCGAAACACTCTCGAGAGCTCAGCATCCTAATCTTGTTCTCCTGCAGGGCTATTGCATTCATAGATACGACAGGCTCTTGATATATTCGTTCATGGAAAACGGCAGTTTGGATTATTGGCTGCACGAAAAATTCGATGGACCTTCTTCTTTAGATTGGAACACAAGGCTCAAGATTGCTCAAGGAGCTGCAAGAGGACTTGCTTACTTGCACCTATCATGTGAGCCACACATCCTTCACCGAGACATCAAATCAAGTAACATCCTTTTAGATGAGAATTTTGGTGCCCATTTGGCTGATTTTGGTCTTGCTAGGCTCATACGTCCTTACGACACACACGTGACGACCGATCTCGTCGGGACATTAGGGTACATTCCGCCTGAGTATGGGCAAGCGTCAGTCGCTACTTACAAGGGCGATGTGTATAGTTTCGGAGTCGTTCTTTTGGAACTTTTGACGGGCAAAAGGCCGATGGATATATGCAAGCCTAAAGGGTGTCGAGATTTGATATCTTGGGTGTTACAGATGAAGAAGGAAGGCAAGGAAAGCAAAGTGTACGACCCTTTAATCAACGAAGAGCAGCATGACAAGCAATTGTCGGAGGTTCTTGAAATATCGTGCCTCTGTCTGAGTGAATATCCAAAAAATCGGCCTTCAACTCACCAGCTAGTTTCTTGGCTTGACAACCTCATCTAG 2619 43.3 MISATFNLPAIQLLDMSQNYLSGSLPPDFCHNSSRIRVLDLGFNSLSGSLSPGLGNCASLETLSLENNNLTGDIPDDLFRMQKLMILRLRDNLLSGKLSKLIGNLSNLVRLDIASNRFSGEIPDVFHTAKKLEFLVAESNNFTGQIPKSLSNSPTLNLLNLRNNSLTGPININCSAMANLTSLDLGTNWFYGPLPSNLPSCRLLKNINLARNNFGGEVPVTFKNFQRLSYLSLSNSSIINLHSALQILQQCKSLSTLVLTLNFHNEELPSDPSLNFENLKVFIIASCKLKGLMPQWLRKSSKLQLLDLSWNRLGGTIPQWFGDFQLLFYLDLSNNSFTGEIPVTITGLQSLINKTISFEEPSPDFPFFMKRNVSGPLKYTQVLSFPPTLELSNNNLSGPIWREFGNLRKLHVLILKFNNLSGEIPSCLSEMASLETLDLSHNKLTGTIPQSLVSLSFLSKFSVAYNQLSGVVPTGGQFPTFPNSSFVGNNLCGDHASPCSSNDQSSFESPEKSGRSRGSIIGEAVGISFGTAFVLSLLILIVLRTCNRRGIDLERDMSNTDDKNLEELESRLVVMFQNKDDNKGITIDDLLKSTNNFDQANIIGCGGFGLVYKATLLDGKRVAIKRLSGDCGQIEREFRAEVETLSRAQHPNLVLLQGYCIHRYDRLLIYSFMENGSLDYWLHEKFDGPSSLDWNTRLKIAQGAARGLAYLHLSCEPHILHRDIKSSNILLDENFGAHLADFGLARLIRPYDTHVTTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTGKRPMDICKPKGCRDLISWVLQMKKEGKESKVYDPLINEEQHDKQLSEVLEISCLCLSEYPKNRPSTHQLVSWLDNLI 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12318423 12321041 - Bpe004934.1 Bpe11g01618 111763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01618 872 CDD STKc_IRAK 603 871 - -
Bpe11g01618 872 SMART serkin_6 597 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g01618 872 PANTHER OSJNBB0004A17.8 PROTEIN 32 871 - -
Bpe11g01618 872 SUPERFAMILY RNI-like 35 470 - -
Bpe11g01618 872 Gene3D Ribonuclease Inhibitor 177 508 IPR032675 -
Bpe11g01618 872 Pfam Leucine rich repeat 408 468 IPR001611 GO:0005515
Bpe11g01618 872 Pfam Leucine Rich Repeat 302 322 IPR001611 GO:0005515
Bpe11g01618 872 Gene3D Phosphorylase Kinase; domain 1 556 672 - -
Bpe11g01618 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Bpe11g01618 872 SMART LRR_typ_2 105 128 IPR003591 -
Bpe11g01618 872 SMART LRR_typ_2 8 32 IPR003591 -
Bpe11g01618 872 SMART LRR_typ_2 177 201 IPR003591 -
Bpe11g01618 872 SMART LRR_typ_2 431 455 IPR003591 -
Bpe11g01618 872 SMART LRR_typ_2 57 81 IPR003591 -
Bpe11g01618 872 SUPERFAMILY Protein kinase-like (PK-like) 582 868 IPR011009 -
Bpe11g01618 872 Gene3D Transferase(Phosphotransferase) domain 1 673 872 - -
Bpe11g01618 872 Gene3D Ribonuclease Inhibitor 1 80 IPR032675 -
Bpe11g01618 872 ProSiteProfiles Leucine-rich repeat profile. 59 81 IPR001611 GO:0005515
Bpe11g01618 872 Gene3D Ribonuclease Inhibitor 81 176 IPR032675 -
Bpe11g01618 872 PRINTS Leucine-rich repeat signature 303 316 - -
Bpe11g01618 872 PRINTS Leucine-rich repeat signature 431 444 - -
Bpe11g01618 872 PANTHER RECEPTOR-LIKE PROTEIN 55 32 871 - -
Bpe11g01618 872 ProSiteProfiles Leucine-rich repeat profile. 433 456 IPR001611 GO:0005515
Bpe11g01618 872 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Bpe11g01618 872 Pfam Protein kinase domain 599 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g01618 872 ProSiteProfiles Protein kinase domain profile. 597 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00240 Bpe-Chr9:1740675 Bpe11g01618 Bpe-Chr11:12318423 1.09E-06 dispersed
Bpe11g01618 Bpe-Chr11:12318423 Bpe03g00294 Bpe-Chr3:3991704 1.41E-15 dispersed
Bpe02g00205 Bpe-Chr2:1435335 Bpe11g01618 Bpe-Chr11:12318423 1.92E-73 transposed
Bpe08g00973 Bpe-Chr8:12154906 Bpe11g01618 Bpe-Chr11:12318423 5.44E-75 transposed
Bpe10g00581 Bpe-Chr10:12775008 Bpe11g01618 Bpe-Chr11:12318423 4.26E-15 transposed
Bpe10g00974 Bpe-Chr10:15211628 Bpe11g01618 Bpe-Chr11:12318423 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63604 PF00069 Pkinase 3.60E-42 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01618 - - cit:102619276 1187.94