Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01619 GTTGTAGAGCCGCATTCACAGCTCCCCAAGCCGGAGGCGCCACCCGGACTTTCCGATTCCCCTGCATCAAACGGTGACTTTAACTACTATAGATCACAATCCATGACAGAAAACTTCACCGTGGACATGCCGGCAATCGGGAAATTCATCCGTGAGAGAAGTAATACCTTATCGGCAGCGATCGTAAAGAGGCTCTCGTCTCTCAAAGACGAAGACGATGAAGTGGCTGACGACTCTAAGGCCAACTCCGGAGTAACGGAGTTCAATCTTTCTGGACTTAAGGTGATTGTCAAGCTAAAGCGTGACGAAAATAGATACAAAGAGCTCAAAGGCCAAGTCAGCTTCTTCTCGAAGTCGAATTGCAGGGATTGCACAGCTGTTCGGAGATTCTTTAGAGAGCAAGGACTCAAATACGTGGAGATAAACATCGATGTGTACCCTCAAAGAGAAGAGGAGCTGGTAAAATTAACCGGAGGTTCATCCGTTCCTCAGATATTCTTCAACGAAAAGTTATTCGGAGGGTTGGTGGCTCTAAATTCTCTGAGAAACAGTGGAGAATTCGACAAGAGGTTAAAGGAGATGCTGAGTAGTAAATGTCCGGACGATGCTCCGGCGCCGCCTGTTTACGGTTTCGACGATCCCGAAGTGGGGTCCATAGACGAATTGATCGGCATCGTCAAATATTTACGGCAGAGATTACCTATTCAGGACCGCTTAATGAAGATGAAAATCATCAAAAACTGCTTCTCCGGGAGCGAGATGGTGGAGGTACTCATTCAACACTTGGATTGCGGACGTCGAAAGGTGGTTGATTTGGGCAAGAAGCTGGCCCAGAGGCACTTCATCCAACATGTTTTCGGGGAAAATGGTTTTGTAGATGGCAACCATTTCTATCGTTTTATTGAGCATGGACCTTCGATTCCCAAATGCTTTAATTTTCGTGGATCAACGAACGACTACGAGCCCAAGCCAGCCGCTGAGATTGGCCGCAAGCTTACCAAGATCATGTCTGCAATCCTCGACTCGTATGCCTCAGACGACAGACGCCACCTCGATTATCTTGGCATCAGCAACAGCGAAGAATTCCGCAGGTATGTGAATCTGGTACAAGAACTTCACCGAGTGAACCTCCACCAACTCTCCAAGGATGAAAAGCTGGCATTCTTCTTGAATTTATATAATGCAATGGTAATCCATGGATTGATCAGATTAGGACACCCGGAAGGCGTAATTGACAGAAGATCCTTCAGCTCTGATTTCCAGTACTTGGTCGGGGGTCATCCTTTTTCTCTGAGTTCCATTAAAAATGGCATCCTAAGAGCTAACAGAAGGCCTCATTTTTCATTGGTAAGGCCCTTTAGCAGTGGGGACAAGCGCTTGGAGCTTGCGTTCGAAAAAGTGAACCCAATAATTCACTTCGGACTCTGCGATGGAACAAGGTCAAGTCCCACGGTGAAGTTCTTCACTGCTCAAGCAGTAGAGAGTGAATTAAGATGCGCAGCTAGAGACTTCTTTAGGAACGGTGGAATTGAGGTGGATTTGGACAAAAGAACTGTTCATCTCTCTGGAATTATCAAGTGGGTAATTGGAGACTTTGGACAAGAAAAAGAAGTACTGAATTGGGTGATGAATTACTTGGATGCAACTAAAGCAGGTCTTTTGACACATCTTGCAGGAGATGGCTGTCCCGTTAACATCTCCTACCAACCTTATGATTGGTCTCTTAATTCCTAC 1734 46.14 VVEPHSQLPKPEAPPGLSDSPASNGDFNYYRSQSMTENFTVDMPAIGKFIRERSNTLSAAIVKRLSSLKDEDDEVADDSKANSGVTEFNLSGLKVIVKLKRDENRYKELKGQVSFFSKSNCRDCTAVRRFFREQGLKYVEINIDVYPQREEELVKLTGGSSVPQIFFNEKLFGGLVALNSLRNSGEFDKRLKEMLSSKCPDDAPAPPVYGFDDPEVGSIDELIGIVKYLRQRLPIQDRLMKMKIIKNCFSGSEMVEVLIQHLDCGRRKVVDLGKKLAQRHFIQHVFGENGFVDGNHFYRFIEHGPSIPKCFNFRGSTNDYEPKPAAEIGRKLTKIMSAILDSYASDDRRHLDYLGISNSEEFRRYVNLVQELHRVNLHQLSKDEKLAFFLNLYNAMVIHGLIRLGHPEGVIDRRSFSSDFQYLVGGHPFSLSSIKNGILRANRRPHFSLVRPFSSGDKRLELAFEKVNPIIHFGLCDGTRSSPTVKFFTAQAVESELRCAARDFFRNGGIEVDLDKRTVHLSGIIKWVIGDFGQEKEVLNWVMNYLDATKAGLLTHLAGDGCPVNISYQPYDWSLNSY 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12336107 12339907 + Bpe024853 Bpe11g01619 111764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01619 578 SMART DEP_3 229 302 IPR000591 GO:0035556
Bpe11g01619 578 Gene3D Glutaredoxin 103 198 - -
Bpe11g01619 578 SUPERFAMILY Thioredoxin-like 111 193 IPR036249 -
Bpe11g01619 578 SUPERFAMILY Winged helix DNA-binding domain 220 321 IPR036390 -
Bpe11g01619 578 ProSiteProfiles Glutaredoxin domain profile. 101 198 - -
Bpe11g01619 578 CDD GRX_DEP 111 183 - -
Bpe11g01619 578 Pfam Protein of unknown function, DUF547 378 504 IPR006869 -
Bpe11g01619 578 MobiDBLite consensus disorder prediction 1 26 - -
Bpe11g01619 578 Pfam Glutaredoxin 114 171 IPR002109 -
Bpe11g01619 578 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 233 300 IPR000591 GO:0035556
Bpe11g01619 578 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 1 577 - -
Bpe11g01619 578 CDD DEP 221 299 - -
Bpe11g01619 578 Gene3D - 219 346 IPR036388 -
Bpe11g01619 578 ProSiteProfiles DEP domain profile. 229 302 IPR000591 GO:0035556
Bpe11g01619 578 PANTHER F26K24.21 PROTEIN 1 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01619 - - - csv:101218879 873.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01619 Bpe-Chr11:12336107 Bpe14g00352 Bpe-Chr14:3370627 3.62E-138 dispersed
Bpe10g00973 Bpe-Chr10:15201441 Bpe11g01619 Bpe-Chr11:12336107 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01619 Bpe_Chr11 FPKM 86.076546 90.93483 330.719543 319.714905 41.164822 44.029503 40.726574 344.197662 342.591766 323.795013