Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01623 ATGATGGATGATGATGGGCTAAATATGCGGAATTGGGGTTACTACGAGCCGTCATTCAAGGGCCATCTTGGACTTCAACTCATATCAACCATGGCAGACCGCGAGTCAAAGCATTTTCTCCCTGGGCGCGATCCTCGTGTCTTTTTGAGCTCCTCTCATGGAGGTTTTCCAGGTGGAGACTCTATAATTCCAGAAGCACCAGTCCATATGAACTATCAAATGGATGGTTGGATAAACCATGGAGAGAAATTTCTCAACTCCAACAATGAATGCCTTCTGCAAAATCTTACTGCTCATCCTCTGCAGAGTCTACCATCTCAAGCATTGCAGGAAGATATGGTCGGAAGAGATGTCGAACAAACTCCGTTGAAAAGGGGCGGTAGAAAACGTCCACCAAAACTCCTGAAAGCTAAAATGGCTAAGAAGCCGAAGGAGAACTCTCCAACCGTTCAACGCATTAAACGAGCTAAGAAGAGCGTAGAATTGGTGATTAATGGTATCGATTTGGACCTTTCGGATATCCCTGTTCCGACCTGCTCTTGCACCGGAACGGCTCAGCAATGTTACCGGTGGGGCTATGGGGGCTGGCAATCAGCTTGTTGCACCACCAACATGTCTATGCATCCTCTCCCGATGAACACCAAGCGGCCGAGAGCAAGGATTGCCGGCCGAAAAATGAGCCAGGGCACATTCAAGAAGGTGTTGGAGAAACTCACATATGAAGGTTATAATTTTGCAAATTCGATTGATTTAAGGACGCACTGGGCAAGACATGGTACCAACAAATTTGCCACGATTAGGTAG 804 47.01 MMDDDGLNMRNWGYYEPSFKGHLGLQLISTMADRESKHFLPGRDPRVFLSSSHGGFPGGDSIIPEAPVHMNYQMDGWINHGEKFLNSNNECLLQNLTAHPLQSLPSQALQEDMVGRDVEQTPLKRGGRKRPPKLLKAKMAKKPKENSPTVQRIKRAKKSVELVINGIDLDLSDIPVPTCSCTGTAQQCYRWGYGGWQSACCTTNMSMHPLPMNTKRPRARIAGRKMSQGTFKKVLEKLTYEGYNFANSIDLRTHWARHGTNKFATIR 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12365775 12366578 - Bpe004937.1 Bpe11g01623 111768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01623 267 SMART GAGA_bind_2 2 267 IPR010409 -
Bpe11g01623 267 PANTHER - 2 267 IPR010409 -
Bpe11g01623 267 PANTHER PROTEIN BASIC PENTACYSTEINE1-RELATED 2 267 - -
Bpe11g01623 267 Pfam GAGA binding protein-like family 2 267 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01623 - - - jre:109015210 337.035
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00923 Bpe11g01623 CCT
Bpe11g01623 Bpe13g01357 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01623 Bpe-Chr11:12365775 Bpe12g00098 Bpe-Chr12:706631 2.22E-38 dispersed
Bpe11g01623 Bpe-Chr11:12365775 Bpe11g01624 Bpe-Chr11:12371579 3.13E-116 tandem
Bpe11g00306 Bpe-Chr11:2236657 Bpe11g01623 Bpe-Chr11:12365775 1.63E-46 transposed
Bpe10g00970 Bpe-Chr10:15182576 Bpe11g01623 Bpe-Chr11:12365775 4.78E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g304 . . . . . . Bma14g01708 . . Cmo18g01034 . Cma18g01024 . Car18g00943 Sed06g1887 Cpe09g00299 . Bhi07g01326 Tan04g0859 Cmetu10g0120 Lac13g0491 . . . Cla05g02302 Cam05g2475 Cec05g2498 Cco05g2540 Clacu05g2470 Cmu05g2332 Cre05g2449 Cone13ag0832 . . . Lsi04g00257 Csa05g02609 Chy10g01144 Cme10g00263 . Blo11g00754 Bda07g01535 . Bpe11g01623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1021 . Blo16g01070 . . Bpe13g01357 Bpe10g00923 Bma14g01627 Bma15g00100 Cmo04g01636 Cmo18g01096 Cma04g00989 Cma18g01074 Car04g01617 Car18g00997 Sed06g1827 Cpe09g00249 Cpe01g01390 Bhi07g01419 Tan04g0937 Cmetu09g1500 Lac13g0423 Hepe10g1837 . . Cla05g02362 Cam05g2533 Cec05g2562 Cco05g2601 Clacu05g2528 Cmu05g2388 Cre05g2504 . . . . Lsi04g00324 Csa05g02545 Chy10g01085 Cme10g00324 Blo06g00950 Blo11g00811 Bda07g01496 . Bpe11g01623 . . Bma06g00750 . . Cmo15g00873 . . . Car15g00216 Cpe13g00999 . . . . . . . . . . . . . . . . . Chy09g00171 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe10g00970 . 1 280 BBR/BPC Transcription factor family AT2G01930 55.4 1.9e-81 299.3
Bpe11g01624 . 1 281 BBR/BPC Transcription factor family AT2G01930 56.3 2.1e-80 295.8
Bpe10g00971 . 16 293 BBR/BPC Transcription factor family AT2G01930 54.7 4.8e-77 284.6
Bpe11g00306 . 112 222 BBR/BPC Transcription factor family AT2G01930 58.6 7.5e-38 154.5
Bpe11g00306 . 104 222 BBR/BPC Transcription factor family AT2G35550 73.9 9.6e-52 200.3
Bpe10g00970 . 159 280 BBR/BPC Transcription factor family AT2G35550 57.4 3.4e-41 165.2
Bpe11g01624 . 161 281 BBR/BPC Transcription factor family AT2G35550 57.9 7.6e-41 164.1
Bpe11g01623 CCT 147 267 BBR/BPC Transcription factor family AT2G35550 52.9 6.0e-38 154.5
Bpe12g00098 . 166 272 BBR/BPC Transcription factor family AT2G35550 57.9 6.7e-37 151.0
Bpe10g00970 . 1 280 BBR/BPC Transcription factor family AT1G68120 51.7 6.9e-73 270.8
Bpe11g00306 . 102 222 BBR/BPC Transcription factor family AT1G68120 50.8 2.7e-37 152.5
Bpe05g00134 BCT 227 336 BBR/BPC Transcription factor family AT1G68120 56.4 3.6e-37 152.1
Bpe02g01724 BCT 227 336 BBR/BPC Transcription factor family AT1G68120 55.5 1.4e-36 150.2
Bpe12g00098 . 1 272 BBR/BPC Transcription factor family AT2G21240 61.9 7.6e-65 244.2
Bpe02g01724 BCT 1 336 BBR/BPC Transcription factor family AT2G21240 50.6 5.1e-61 231.5
Bpe05g00134 BCT 1 336 BBR/BPC Transcription factor family AT2G21240 50.9 8.7e-61 230.7
Bpe12g00098 . 1 272 BBR/BPC Transcription factor family AT4G38910 59.9 1.2e-59 226.9
Bpe05g00134 BCT 88 336 BBR/BPC Transcription factor family AT5G42520 57.3 5.3e-76 281.2
Bpe02g01724 BCT 88 336 BBR/BPC Transcription factor family AT5G42520 57.7 2.9e-74 275.4
Bpe11g00306 . 104 222 BBR/BPC Transcription factor family AT2G35550 73.9 9.6e-52 200.3
Bpe10g00970 . 159 280 BBR/BPC Transcription factor family AT2G35550 57.4 3.4e-41 165.2
Bpe11g01624 . 161 281 BBR/BPC Transcription factor family AT2G35550 57.9 7.6e-41 164.1
Bpe11g01623 CCT 147 267 BBR/BPC Transcription factor family AT2G35550 52.9 6.0e-38 154.5
Bpe12g00098 . 166 272 BBR/BPC Transcription factor family AT2G35550 57.9 6.7e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002345 4 2 3 4 4 1 2 1 1 0 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 2 5 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22131 PF06217 GAGA_bind 3.20E-84 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01623 Bpe_Chr11 FPKM 10.964126 10.699648 14.648295 14.290605 15.526165 15.724188 16.306808 20.565205 20.517687 19.909298