Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01631 ATGGCACAAGAACAGGAGACAAAGAAAAGCTCTACACTCTCAAACTGTGATCTTTACTTTCAAACCATCCAATCGAGGAAGAAATTACCACAATCATTGCAGGAGACACTGACAGATGCATTTTCGAGGATTCCGGTTTCATCATTTCCGGGTGTTCCTGGAGGCAAAGTGATTGAGATTCTGGCAGACACAACTATAGCTGATGCAGTTAAAATTCTATCTGAATGCAACATTTTATCAGCTCCTGTGAAGAACCCTGAAGCAGAAACGAGTTTAAATTGGAGGGAGAGATACCTGGGAATCATAGACTATTCTGCCATTATCTTGTGGGTGTTGGAGAATGCAGAGCTTGCAGCTGTAGCTCTCTCGGCCAGCTCGGCAACAGCAGCCGGAGTTGGTGCCGGTGCAGTGAGTGCACTCGGAGCGTTGGCTTTCGGCATGACGGGTCCGGTTGCAGTAGCCGGAGTTACTGCAGCTGCAGTTGGGGCTGCCGTCGCCGGAGGTATGGTGGCTGATAAAGGGATGGGCCGAGATGCTCCAACTGCTGCTGATGAACTGGGGGAGGATTTTTACAAAGTAATACTTCGAGAAGAGCCCTTCAAATCAACCAAAGTGAGGTCAATTTTGAGATCTTTCCGGTGGGCTCCATTTCTTCCGGTGACAACCGACAGTTCAATGTTGAGCGTATTATTATTACTCTCCAAATACAGGTTAAGAAATGTGCCTGTTATTGAACCAGGCAAGCCTGACATCAAGAACTACATAACTCAATCTGCAGTAGTACAGGGTCTTGAAGGGTGCAGAGGAAGGGATTGGTTCGACTGTATATCTGCCAAACCAATTTCTGATTTAGGCCTTCCTTTCATGTCCTCTACCGAGGTTATTAGTATCCAAAGCGATGATCTTATACTGGAAGCCTTTAAGAGAATGAGAGAGAATCAAATTGGTGGTCTTCCAGTTGTGGAGGGGCCAAGTAAAAAGATAGTGGGGAACATAAGCATCAGAGATATTCGACATTTACTGCTGAAACCCGAACTTTTCTCTAATTTCAGGAAACTGAGTGTTATGGGTTTTATTAACACAATCATATCGACGAAGCAAGAAACCGGAAACATTTTACCACCGATTACCTGCAAACTCGAGTCGACTCTCGGGTCTGTAATCCACAGTTTAGCCTCCAACTCAGTTCACAGGATACATGTGGTTGATGGAGAGGATGGTGAAGTTGTTGGGGTCATTACACTTCGAGATGTGATTTCTTGCTTCATCTATGAGCCGCTTAATTATATTGAGGAAAACTTTGGATTTGCGGTAAAAGAAATGTTGAATGGCGAAGCCAAATAG 1344 44.87 MAQEQETKKSSTLSNCDLYFQTIQSRKKLPQSLQETLTDAFSRIPVSSFPGVPGGKVIEILADTTIADAVKILSECNILSAPVKNPEAETSLNWRERYLGIIDYSAIILWVLENAELAAVALSASSATAAGVGAGAVSALGALAFGMTGPVAVAGVTAAAVGAAVAGGMVADKGMGRDAPTAADELGEDFYKVILREEPFKSTKVRSILRSFRWAPFLPVTTDSSMLSVLLLLSKYRLRNVPVIEPGKPDIKNYITQSAVVQGLEGCRGRDWFDCISAKPISDLGLPFMSSTEVISIQSDDLILEAFKRMRENQIGGLPVVEGPSKKIVGNISIRDIRHLLLKPELFSNFRKLSVMGFINTIISTKQETGNILPPITCKLESTLGSVIHSLASNSVHRIHVVDGEDGEVVGVITLRDVISCFIYEPLNYIEENFGFAVKEMLNGEAK 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12429987 12431746 + Bpe004944.1 Bpe11g01631 111776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01631 447 Pfam CBS domain 290 342 IPR000644 -
Bpe11g01631 447 Pfam CBS domain 374 420 IPR000644 -
Bpe11g01631 447 CDD CBS_pair_SF 291 419 - -
Bpe11g01631 447 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 443 - -
Bpe11g01631 447 SUPERFAMILY CBS-domain pair 275 431 IPR046342 -
Bpe11g01631 447 ProSiteProfiles CBS domain profile. 371 432 IPR000644 -
Bpe11g01631 447 PANTHER BNAANNG38820D PROTEIN 8 443 - -
Bpe11g01631 447 SMART cbs_1 374 423 IPR000644 -
Bpe11g01631 447 SMART cbs_1 56 112 IPR000644 -
Bpe11g01631 447 SMART cbs_1 293 342 IPR000644 -
Bpe11g01631 447 SMART cbs_1 216 265 IPR000644 -
Bpe11g01631 447 ProSiteProfiles CBS domain profile. 289 348 IPR000644 -
Bpe11g01631 447 Gene3D - 52 267 IPR046342 -
Bpe11g01631 447 Gene3D - 276 425 IPR046342 -
Bpe11g01631 447 SUPERFAMILY CBS-domain pair 35 262 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01631 - - - mnt:21403963 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00603 Bpe-Chr3:26237432 Bpe11g01631 Bpe-Chr11:12429987 2.24E-06 dispersed
Bpe11g01631 Bpe-Chr11:12429987 Bpe12g00484 Bpe-Chr12:10649253 1.27E-84 dispersed
Bpe11g01631 Bpe-Chr11:12429987 Bpe07g00887 Bpe-Chr7:14953562 1.38E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g862 . . . . . . Bma14g01634 . Cmo04g01714 Cmo18g01195 . Cma18g01170 . Car18g01079 Sed08g0035 Cpe09g00157 Cpe01g01449 Bhi07g01598 Tan04g1112 Cmetu10g1744 Lac13g0290 . . . Cla05g02467 Cam05g2652 Cec05g2687 Cco05g2721 Clacu05g2656 Cmu05g2508 Cre05g2624 . Cone19ag0967 . . Lsi04g00452 Csa05g02423 Chy10g00979 Cme10g00442 . . Bda07g01459 . Bpe11g01631 . . . . . . Cma04g01636 . Car04g01677 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009000 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 0 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01631 Bpe_Chr11 FPKM 10.832787 9.187389 8.436478 8.546317 5.596616 4.431484 6.18437 13.647286 13.953996 16.66391