Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01634 ATGAGTAACTATGGATATACTGTACAAGTCACTGGGTTGTCTCCTAAAGCTACCGAGAAAGATGTCCATGATTTTTTCGCTTTCTCTGGCGCTATCGAACACGTGGAGATTGTCGGATCAGGTGATTGCGCGTGTACAGCCTACGTGACGTTCAAAGATTCTTATTCTCAGGAAACAGCTTGTTTGCTCAGTGGTGCCACAATCATAGATCAGCGGGTCTGCATTATTCGTTGGGGGCAGTCTGAAGACGAATATGATTTTTGGAACAGGCCCTCCTGGAATCATGACGACGAAAATACATCTTCATCTGCTTATTATACAGAAAGAAGTCAGTTCGTACCGAGTGCCGGAGAAGCAGTAATCATGGCCCAGGAAGTTGTAAAAGCCATGCTAGCAAAGGGATACGTTCTGGGCAAAGATGCATTGGCCACTGCAAAGGCCTTGGATGAATCTCATAATGTATCTGCAACGGCAGCTGCAAAAGTAGCTGATATAAGTAATCGAATTGGTCTTACCGATATGTTTTGTGCAAGTGTGGAAACTGTTCGATCGATGGACGAGAAGTACAACATATTACAGACAACAAAATCTGCTGTGTCGGCTACTGGAAAAACAGCTGCCTCAGCTGCAGATTCTGTGATGAAAAGTAGCTATTTTTCGAAGGGAGCTCTTTGGGTTTCTGATGCCCTTAATCGAGCTGCTAAAGTTGCATCTGATTTGGGGAATCGTGGGGCTGAGCGTTGA 744 44.89 MSNYGYTVQVTGLSPKATEKDVHDFFAFSGAIEHVEIVGSGDCACTAYVTFKDSYSQETACLLSGATIIDQRVCIIRWGQSEDEYDFWNRPSWNHDDENTSSSAYYTERSQFVPSAGEAVIMAQEVVKAMLAKGYVLGKDALATAKALDESHNVSATAAAKVADISNRIGLTDMFCASVETVRSMDEKYNILQTTKSAVSATGKTAASAADSVMKSSYFSKGALWVSDALNRAAKVASDLGNRGAER 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12457109 12459137 - Bpe004947.1 Bpe11g01634 111779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01634 247 Gene3D - 2 86 IPR012677 -
Bpe11g01634 247 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 246 - -
Bpe11g01634 247 SMART rrm1_1 7 77 IPR000504 GO:0003723
Bpe11g01634 247 CDD RRM_Vip1_like 8 75 IPR034360 -
Bpe11g01634 247 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 246 - -
Bpe11g01634 247 SUPERFAMILY RNA-binding domain, RBD 6 93 IPR035979 GO:0003676
Bpe11g01634 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 81 IPR000504 GO:0003723
Bpe11g01634 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 72 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01634 - - - tcc:18610422 350.132
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00810 Bpe-Chr8:10141074 Bpe11g01634 Bpe-Chr11:12457109 7.15E-38 dispersed
Bpe11g01634 Bpe-Chr11:12457109 Bpe11g00320 Bpe-Chr11:2355334 3.18E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g881 . . . . . . . . Cmo04g01723 Cmo18g01187 . Cma18g01164 . Car18g01073 Sed06g1544 Cpe09g00165 . Bhi07g01588 Tan04g1099 Cmetu10g1298 Lac13g0302 Hepe10g1726 . . . . . . . . . Cone13ag0968 Cone19ag0958 . . Lsi04g00441 Csa05g02433 Chy10g00986 Cme10g00432 . Blo11g00763 Bda07g01461 . Bpe11g01634 . . . . Cmo04g02886 . Cma04g01644 . Car04g01685 . . . . . . . . . . . . . . . . . . . . .
Vvi14g1513 . . . . . . . . . . . . . . . . . Bhi06g00413 Tan11g0526 . . Hepe02g3159 . Lcy10g1998 . . . . . . . . . Cone2ag0186 Cone16ag0857 Lsi02g01493 Csa05g02433 . . . . . . . Bpe11g01634 . . . Cmo04g02886 . Cma04g02758 . . . . Cpe01g02385 . . . . . . . Cla09g01791 Cam09g1881 Cec09g1945 Cco09g2037 . . Cre01g0626 . . Chy09g00263 Cme09g00286
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001744 2 4 2 0 1 2 2 2 2 2 2 2 2 2 2 3 1 4 2 2 2 2 2 2 2 2 2 5 6 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01634 Bpe_Chr11 FPKM 140.773758 153.040451 150.822662 145.931305 167.945068 177.733627 168.571716 207.68158 224.638962 214.268723