Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01640 ATGGCAATCAAATCAAACTCCATTGATGGAAGGACCAGGAGCTCTATCCAAATTGTTGTGGTAGTTGGATTGTGCTGCTTCTTCTACCTATTGGGTGCGTGGCAAAGAAGCGGTTTTGGCAAAGGAGATCGAATAGCGGTAGAGATAACAGAGAAAGGAGCCGAATGTGATATACTTCCCAATCTGAGCTTCGAGACCCATCATGGTGGAGAAGCTGGAAATTACAAAGACAACTCGAAAATACTCAAACCGTGCGATACTCGTTTCACTGATTACACACCCTGCCAAGACCAAAGACGGGCCATGACCTTCCCTCGGGAAAGCATGATTTATCGAGAGAGGCACTGTCCGAGCGAGGAGGAGAAGCTTGAATGCCTTATTCCCGCACCCAAGGGATATGTCACTCCCTTTTCTTGGCCGAAGAGTCGAGACTTTGTGCCCTTTGCGAATGCGCCTTATAAGAGTTTGACCGTGGAGAAGGCTATACAAAATTGGATTCAATATGAAGGCAATGTGTTTCGATTTCCTGGTGGGGGAACTCAGTTTCCACAAGGAGCTGATAAATACATTGACCAGCTTGCTTCGGTTATACCGATGCACAATGGGACTGTCCGAACTGCACTAGACACTGGATGTGGGGTTGCTAGCTGGGGAGCTTACCTTTTAGGTAGGAATGTTATCGCAATGTCATTTGCGCCGAGAGATTCACATGAAGCACAAGTCCAATTTGCTTTGGAAAGAGGCGTGCCTGCCGTTATTGGTGTTTTAGGCACAATTAAGCTGCCTTATCCGGCTAGAGCTTTTGACATGGCACACTGCTCTCGTTGTTTAATTCCTTGGGGCGCAAATAATGGAATGTACATGAAGGAAGTCGATCGAGTTCTTAGACCAGGTGGCTATTGGGTTCTTTCCGGTCCGCCCATCAACTGGAAAAACTTGTACAAGGCTTGGCAGCGTCCCAAAGAGGAGCTCGAAGAGGAACAGAGAAAGATCGAAGAAATAGCTGAGCTACTCTGTTGGGAAAAGAAGTACGAGGGTGGTGAAACCGCCATTTGGCAGAAACGAGTTAGCACCGATTCGTGTTCTAGCAGAAATGAAGGCTCTGAAGCTACGATTTGTGAATCTACCGAAATAGACGAAGTTTGGTACAAGAAAATGGACGGGTGCATAACTCCATACCCAGGCGAAGCATCCATAGGGGAACTAAAGGCCTTCCCAGAAAGGCTGCATGCCGTCCCTCCTAGAATTGCTGGTGGATCTGTTCCTGAAGTCTCTGTTGAGACATATCAGGAGGATAACAATTTATGGAAAAAGCACGCGAAGGCTTATCGGAAAATCAATAAATTTATCAGTACGGGTCGATATCGCAATGTTATGGACATGAACGCCGGTTTGGGAGGTTTTGCTGCAGCAATACACTCGTCAAAATTATGGGTTATGAACGTTGTTCCAACCATTGCTGAGAAAAATACATTAGGGGTCATATACGAGCGGGGATTGATTGGCATCTATCACGATTGGTGTGAAGCCTTCTCTACATACCCAAGGACATACGACCTCATTCATGCTAATGGAGTTTTCAGTCTTTACAAGGACAGGTGCAAAATGGTGGACATACTTCTGGAAATGGACAGGATATTGAGACCAGAAGGAGCCGTCATATTCCGAGACGAAGTAGATGTTCTAATCCAAGTAAGGAGGACAGTTGCAGGAATGAGGTGGGACACAAAAATGGTAGATCACGAGGATGGTCCTCTTGTGCCCGAGAAGATACTGGTCGCCGTGAAGCAATACTGGGTTGTTGGTCAAAACTCCACATCCACTACATGA 1830 46.39 MAIKSNSIDGRTRSSIQIVVVVGLCCFFYLLGAWQRSGFGKGDRIAVEITEKGAECDILPNLSFETHHGGEAGNYKDNSKILKPCDTRFTDYTPCQDQRRAMTFPRESMIYRERHCPSEEEKLECLIPAPKGYVTPFSWPKSRDFVPFANAPYKSLTVEKAIQNWIQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPMHNGTVRTALDTGCGVASWGAYLLGRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPARAFDMAHCSRCLIPWGANNGMYMKEVDRVLRPGGYWVLSGPPINWKNLYKAWQRPKEELEEEQRKIEEIAELLCWEKKYEGGETAIWQKRVSTDSCSSRNEGSEATICESTEIDEVWYKKMDGCITPYPGEASIGELKAFPERLHAVPPRIAGGSVPEVSVETYQEDNNLWKKHAKAYRKINKFISTGRYRNVMDMNAGLGGFAAAIHSSKLWVMNVVPTIAEKNTLGVIYERGLIGIYHDWCEAFSTYPRTYDLIHANGVFSLYKDRCKMVDILLEMDRILRPEGAVIFRDEVDVLIQVRRTVAGMRWDTKMVDHEDGPLVPEKILVAVKQYWVVGQNSTSTT 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12526683 12529368 - Bpe004953.1 Bpe11g01640 111785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01640 609 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 437 558 IPR029063 -
Bpe11g01640 609 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 327 IPR029063 -
Bpe11g01640 609 PANTHER METHYLTRANSFERASE PMT2-RELATED 2 605 - -
Bpe11g01640 609 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 2 605 IPR004159 GO:0008168
Bpe11g01640 609 Gene3D Vaccinia Virus protein VP39 159 357 IPR029063 -
Bpe11g01640 609 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 91 596 IPR004159 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01640 - - - jre:108988781 1065.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00868 Bpe11g01640 CCT
Bpe10g00868 Bpe11g01640 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01640 Bpe-Chr11:12526683 Bpe14g00997 Bpe-Chr14:7361437 0 dispersed
Bpe07g00228 Bpe-Chr7:1611809 Bpe11g01640 Bpe-Chr11:12526683 0 transposed
Bpe14g00998 Bpe-Chr14:7370364 Bpe11g01640 Bpe-Chr11:12526683 5.23E-46 transposed
Bpe10g00868 Bpe-Chr10:14528753 Bpe11g01640 Bpe-Chr11:12526683 0 wgd
Bpe11g01640 Bpe-Chr11:12526683 Bpe13g00287 Bpe-Chr13:10748746 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g905 . . . . . Bpe10g00868 Bma14g01641 Bma15g00160 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0590 Cone9ag0593 . . . . Blo06g00905 Blo11g00770 . . Bpe11g01640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004647 1 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01640 Bpe_Chr11 FPKM 0.874446 0.982056 0.408555 0.257726 0.911725 1.498073 0.374677 2.69826 3.28869 2.974294