Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01642 ATGGGCGATCGCTTGGTTCTTTGTGTGGATCGATCGACCGAAAAGCCCGATGAGAGTGCTCTTCTCGTGCCTAGAGAAGTTGATGTGACCTCAGAGTCTGTCGGTCCTTCGGGTTCATCATTGGCTGGAACGGCTATAAATGAGAAGAGAACGGAGAAGAATGAGGCATTGGGAGAAGAGGAGGAGCTGCTGATTAAAGCGGCAGAGTGCCGAATTTGTCAGGAGGAGGACGCTATCAAGAATTTGGAAACCCCGTGTGCCTGTAGTGGTAGTCTCAAGTATGCTCATAGGCAGTGCGTTCAACATTGGTGTAATGAGAAAGGAGATATAACTTGTGAGATATGTCATCAGCCTTACCAACCTGGTTATACAGCTCCAACTCGCCCCCCTCAGGCTGAAGAAATTGCAATTGATATTGGCGGAGGATGGACAATTTCTGGAACCCCTTTGGATTTACATGATCCCCGCCTGTTAGCGATTGCTGAGGCAGAACACCATTTCTTTGAGGCAGAGTATGATGAGTATGCATCTTCAAACTCCAGTGGAGCTGCATTTTGTCGTTCAGCTGCACTTATTAATGAAGGTCTTAAACTGTGGGCCATAACCAAATTATATGAACAAATGGTGCAAAGCCTTTCAAATGCATTTGCCGCAACAGAGCGATTGTTTAATTATAACAGCGAGAGCTCTAAGCCAAAGAAGAACACCCCTAGTAGTTCAAACTCGGTCAAGTTTCAGAAGCCAAACACAGGAACTGTTGTAAAGAAACCTGGGTGTAACAATCTCCTTGGGTCAAAGTTCCTTGTAAAGACAGACAACAGCTCAATTTGTCACTTCTTTGATCAACCAAAACTCTCAGCCAAACAGGCGCATTGGCACGAATTAATTTCAGAGTTTGATTTTCACTTCGAACACAAGTCGGGCCAGACCAACAAGGTAGTTGATGCGTTGAGTCGGAAGGCAGAGTGCGCAAGCCTATGTTATCTATCTCAACTTCAGGCATTCATGGCTCTTCTTCTCTTGAGACACACATTTTCTGTCACGGATCCTGATGGAGACGATGATGCATCGGCTTTTCTCTCTATTTTCTTGCTCCGAGCTGCTGGATTTCTTCTACCCTGCTACATTATGGCTTGGGCCATCAGTATCCTGCAGCGACGGCGCCAAAGACAGGAGGCAGCAGCATTGGCAGCAACTCAAGTTGCTTTTGTGCTGCAGTCTGGTCAACATAGAGGCAGTTTACTTTAG 1248 46.23 MGDRLVLCVDRSTEKPDESALLVPREVDVTSESVGPSGSSLAGTAINEKRTEKNEALGEEEELLIKAAECRICQEEDAIKNLETPCACSGSLKYAHRQCVQHWCNEKGDITCEICHQPYQPGYTAPTRPPQAEEIAIDIGGGWTISGTPLDLHDPRLLAIAEAEHHFFEAEYDEYASSNSSGAAFCRSAALINEGLKLWAITKLYEQMVQSLSNAFAATERLFNYNSESSKPKKNTPSSSNSVKFQKPNTGTVVKKPGCNNLLGSKFLVKTDNSSICHFFDQPKLSAKQAHWHELISEFDFHFEHKSGQTNKVVDALSRKAECASLCYLSQLQAFMALLLLRHTFSVTDPDGDDDASAFLSIFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGSLL 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12540446 12554080 - Bpe004955.1 Bpe11g01642 111787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01642 415 CDD RING_CH-C4HC3_MARCH 70 116 - -
Bpe11g01642 415 Pfam Protein of unknown function (DUF3675) 319 381 IPR022143 -
Bpe11g01642 415 Pfam Protein of unknown function (DUF3675) 121 192 IPR022143 -
Bpe11g01642 415 ProSiteProfiles Zinc finger RING-CH-type profile. 62 122 IPR011016 GO:0008270
Bpe11g01642 415 SUPERFAMILY RING/U-box 68 120 - -
Bpe11g01642 415 MobiDBLite consensus disorder prediction 227 249 - -
Bpe11g01642 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 125 IPR013083 -
Bpe11g01642 415 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 199 IPR033275 -
Bpe11g01642 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 199 - -
Bpe11g01642 415 SMART ringv_2 69 116 IPR011016 GO:0008270
Bpe11g01642 415 MobiDBLite consensus disorder prediction 28 47 - -
Bpe11g01642 415 Pfam RING-variant domain 70 115 IPR011016 GO:0008270
Bpe11g01642 415 MobiDBLite consensus disorder prediction 32 47 - -
Bpe11g01642 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 323 409 - -
Bpe11g01642 415 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 323 409 IPR033275 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01642 - - - rcu:8281803 252.292
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00871 Bpe11g01642 CCT
Bpe10g00871 Bpe11g01642 ECH
Bpe02g02343 Bpe11g01642 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00369 Bpe-Chr7:3105187 Bpe11g01642 Bpe-Chr11:12540446 2.82E-09 dispersed
Bpe11g00167 Bpe-Chr11:1157288 Bpe11g01642 Bpe-Chr11:12540446 1.75E-27 dispersed
Bpe11g01642 Bpe-Chr11:12540446 Bpe01g00187 Bpe-Chr1:1123780 3.58E-08 dispersed
Bpe06g00062 Bpe-Chr6:729570 Bpe11g01642 Bpe-Chr11:12540446 1.16E-06 transposed
Bpe10g00871 Bpe-Chr10:14539854 Bpe11g01642 Bpe-Chr11:12540446 1.26E-41 wgd
Bpe11g01642 Bpe-Chr11:12540446 Bpe15g00601 Bpe-Chr15:16918974 9.28E-17 wgd
Bpe11g01642 Bpe-Chr11:12540446 Bpe02g02343 Bpe-Chr2:23950707 9.14E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g916 Blo01g00426 . Bda01g02156 . . Bpe10g00871 Bma14g01644 Bma15g00158 Cmo04g01735 Cmo18g01172 . Cma18g01151 . Car18g01060 Sed08g1983 Cpe09g00179 Cpe01g01464 Bhi07g01568 Tan04g1080 Cmetu10g1577 Lac13g0318 Hepe10g1741 . . Cla05g02442 Cam05g2627 Cec05g2661 Cco05g2699 Clacu05g2631 Cmu05g2485 Cre05g2598 Cone13ag0955 Cone19ag0947 Cone6ag0584 Cone9ag0587 Lsi04g00426 Csa05g02449 Chy10g01000 Cme10g00416 Blo06g00906 Blo11g00773 Bda07g01520 . Bpe11g01642 Bpe02g02343 Bma01g00099 . . . . Cma04g01657 . Car04g01697 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000006 2 55 1 5 3 7 1 19 23 1 28 10 23 1 39 61 9 1 0 16 4 70 1 20 0 1 2 11 4 1 419
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01642 Bpe_Chr11 FPKM 1.159055 1.060751 43.894569 45.313484 394.428192 404.199097 379.773956 16.554258 16.495476 16.097357