Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe11g01646 | ATGGGAAGGGTAAAGCTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCAAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTAGCGATATTGTGTGACATAGACATTATTCTACTCATGTTTTCACCTACCGGAAAGCCCTCATTATGCAGTGGAAAGCGCAGTATTGAAGAAGTCATTGCAAAGTTTGCTCAGCTGACTCCTCAAGAAAGGGCTAAAAGGAAACTGGAAAGCCTTGAAGCTCTGAAGAAGACTTTCAAGAAATTAGATCATGATGTCAATATTGAAGAATTCTTGGGTACAAGTACTCAGACCATTGAGGACTTGGCTGGCCAAGCAAAGTTATTACAAGCTCAACTTTCTGAAATACACAATAGATTGAGCTATTGGACCAATCCTGAAAAGATAAATAGTGTAGAGCATTTGACCCAAATGGAAGATTCACTGAGGGAGTCGCTAAACCAAATTCAAACACATAAGGAAAATCTACAGAAGCATCCTCTTATTCCATTAGAATGTTCTAGTCAGTTCCAAAATGGAATGCATATACCTTTCAGAATGGGCGCTGAGCAACAAGTCCAACCTTACTCGTGGATTCCAAATAATGACAGTCATCACATAATTTTGCCACCCGAGGAGCCTCACTTGCTTTCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTATTCTGGGTATTTCGGCACTGGTAGAAGTCCAGAGATATCTAATTCTGGGCAAGAAAATGGAGTTCTCCATGAATTAAGCAGAACAGCAGCTCTCAGACCTCAACTAGGTGGGCAATTTCCCTATCTGCCATACAATGTCAATTATTTGAGCGACCCAAAATTTCAACTGACGACAGAGTTGAATCCGCCTGATAATCCCATGGACTATCATGTTAATGGGAGCTTTGAACCTCCAAGACCTGCATATGACGCCAACAATCACAACTGGACATCAACTTCCGGCCCTTTTGCCGTAAATTTATTTGACGATCGACTATATCCACAGCAACAGAATTGA | 1056 | 41.48 | MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELAILCDIDIILLMFSPTGKPSLCSGKRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIEEFLGTSTQTIEDLAGQAKLLQAQLSEIHNRLSYWTNPEKINSVEHLTQMEDSLRESLNQIQTHKENLQKHPLIPLECSSQFQNGMHIPFRMGAEQQVQPYSWIPNNDSHHIILPPEEPHLLSHRDVECSASSSFASYSGYFGTGRSPEISNSGQENGVLHELSRTAALRPQLGGQFPYLPYNVNYLSDPKFQLTTELNPPDNPMDYHVNGSFEPPRPAYDANNHNWTSTSGPFAVNLFDDRLYPQQQN | 351 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12625769 | 12628962 | + | Bpe004959.1 | Bpe11g01646 | 111791 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe11g01646 | 351 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 54 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01646 | 351 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 | 1 | 350 | - | - | |
Bpe11g01646 | 351 | ProSiteProfiles | MADS-box domain profile. | 1 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01646 | 351 | CDD | MADS_SRF_like | 2 | 81 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Bpe11g01646 | 351 | SUPERFAMILY | SRF-like | 2 | 94 | IPR036879 | GO:0003677|GO:0046983 | |
Bpe11g01646 | 351 | Gene3D | - | 14 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Bpe11g01646 | 351 | Coils | Coil | 76 | 96 | - | - | |
Bpe11g01646 | 351 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 350 | - | - | |
Bpe11g01646 | 351 | Coils | Coil | 149 | 169 | - | - | |
Bpe11g01646 | 351 | Coils | Coil | 113 | 133 | - | - | |
Bpe11g01646 | 351 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01646 | 351 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01646 | 351 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01646 | 351 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe10g00655 | Bpe-Chr10:13185083 | Bpe11g01646 | Bpe-Chr11:12625769 | 9.79E-12 | dispersed | |
Bpe11g01646 | Bpe-Chr11:12625769 | Bpe06g00030 | Bpe-Chr6:367437 | 1.95E-17 | dispersed | |
Bpe14g00319 | Bpe-Chr14:3138320 | Bpe11g01646 | Bpe-Chr11:12625769 | 1.61E-13 | dispersed | |
Bpe15g00449 | Bpe-Chr15:15933486 | Bpe11g01646 | Bpe-Chr11:12625769 | 5.07E-30 | transposed | |
Bpe10g00879 | Bpe-Chr10:14576549 | Bpe11g01646 | Bpe-Chr11:12625769 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22138 | PF00319 | SRF-TF | 8.10E-18 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe11g01646 | - | - | jre:109009266 | 532.717 |