Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01646 ATGGGAAGGGTAAAGCTGAAGATAAAGAGGTTGGAGAACACAAATGGCCGTCAAGCAACTTATGCAAAAAGGAAACATGGGATTATGAAGAAGGCTAATGAGTTAGCGATATTGTGTGACATAGACATTATTCTACTCATGTTTTCACCTACCGGAAAGCCCTCATTATGCAGTGGAAAGCGCAGTATTGAAGAAGTCATTGCAAAGTTTGCTCAGCTGACTCCTCAAGAAAGGGCTAAAAGGAAACTGGAAAGCCTTGAAGCTCTGAAGAAGACTTTCAAGAAATTAGATCATGATGTCAATATTGAAGAATTCTTGGGTACAAGTACTCAGACCATTGAGGACTTGGCTGGCCAAGCAAAGTTATTACAAGCTCAACTTTCTGAAATACACAATAGATTGAGCTATTGGACCAATCCTGAAAAGATAAATAGTGTAGAGCATTTGACCCAAATGGAAGATTCACTGAGGGAGTCGCTAAACCAAATTCAAACACATAAGGAAAATCTACAGAAGCATCCTCTTATTCCATTAGAATGTTCTAGTCAGTTCCAAAATGGAATGCATATACCTTTCAGAATGGGCGCTGAGCAACAAGTCCAACCTTACTCGTGGATTCCAAATAATGACAGTCATCACATAATTTTGCCACCCGAGGAGCCTCACTTGCTTTCCCATAGGGATGTGGAGTGCTCTGCAAGTTCCTCCTTTGCTAGTTATTCTGGGTATTTCGGCACTGGTAGAAGTCCAGAGATATCTAATTCTGGGCAAGAAAATGGAGTTCTCCATGAATTAAGCAGAACAGCAGCTCTCAGACCTCAACTAGGTGGGCAATTTCCCTATCTGCCATACAATGTCAATTATTTGAGCGACCCAAAATTTCAACTGACGACAGAGTTGAATCCGCCTGATAATCCCATGGACTATCATGTTAATGGGAGCTTTGAACCTCCAAGACCTGCATATGACGCCAACAATCACAACTGGACATCAACTTCCGGCCCTTTTGCCGTAAATTTATTTGACGATCGACTATATCCACAGCAACAGAATTGA 1056 41.48 MGRVKLKIKRLENTNGRQATYAKRKHGIMKKANELAILCDIDIILLMFSPTGKPSLCSGKRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNIEEFLGTSTQTIEDLAGQAKLLQAQLSEIHNRLSYWTNPEKINSVEHLTQMEDSLRESLNQIQTHKENLQKHPLIPLECSSQFQNGMHIPFRMGAEQQVQPYSWIPNNDSHHIILPPEEPHLLSHRDVECSASSSFASYSGYFGTGRSPEISNSGQENGVLHELSRTAALRPQLGGQFPYLPYNVNYLSDPKFQLTTELNPPDNPMDYHVNGSFEPPRPAYDANNHNWTSTSGPFAVNLFDDRLYPQQQN 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12625769 12628962 + Bpe004959.1 Bpe11g01646 111791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01646 351 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Bpe11g01646 351 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 1 350 - -
Bpe11g01646 351 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Bpe11g01646 351 CDD MADS_SRF_like 2 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bpe11g01646 351 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Bpe11g01646 351 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Bpe11g01646 351 Coils Coil 76 96 - -
Bpe11g01646 351 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 350 - -
Bpe11g01646 351 Coils Coil 149 169 - -
Bpe11g01646 351 Coils Coil 113 133 - -
Bpe11g01646 351 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe11g01646 351 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe11g01646 351 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe11g01646 351 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00655 Bpe-Chr10:13185083 Bpe11g01646 Bpe-Chr11:12625769 9.79E-12 dispersed
Bpe11g01646 Bpe-Chr11:12625769 Bpe06g00030 Bpe-Chr6:367437 1.95E-17 dispersed
Bpe14g00319 Bpe-Chr14:3138320 Bpe11g01646 Bpe-Chr11:12625769 1.61E-13 dispersed
Bpe15g00449 Bpe-Chr15:15933486 Bpe11g01646 Bpe-Chr11:12625769 5.07E-30 transposed
Bpe10g00879 Bpe-Chr10:14576549 Bpe11g01646 Bpe-Chr11:12625769 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22138 PF00319 SRF-TF 8.10E-18 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01646 - - jre:109009266 532.717