Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01654 ATGTCGGACGAGGAGCACCACTTTGAGTCGAAGGCCGACGCTGGAGCTTCCAAAACCTATCCGCAGCAGGCCGGCACCATTCGCAAAAACGGTTACATAGTCATCAAGGGCAGACCTTGCAAGGTTGTGGAGGTCTCCACTTCTAAAACCGGTAAGCATGGTCATGCTAAATGTCACTTTGTTGCAATTGACATCTTCACTGCCAAAAAGTTGGAAGATATTGTTCCTTCTTCACACAATTGTGATGTACCCCATGTCACCCGAACTGACTATCAATTGATCGATATCTCTGAGGATGGATTTGTTAGTCTGCTGATGGACAATGGTAGCACCAAGGATGACCTGAGGCTTCCAACCGATGACAACCTTCTGACTCAGATTAAAGATGGATTTTCTGAGGGTAAGGATCTGGTCGTCTCTGTTATGTCTGCAATGGGGGAAGAGCAGATTTGTGCACTCAAAGACATTGGCCCCAAGTAG 480 47.08 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLMDNGSTKDDLRLPTDDNLLTQIKDGFSEGKDLVVSVMSAMGEEQICALKDIGPK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12682755 12687601 - Bpe004967.1 Bpe11g01654 111799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01654 159 PANTHER BNAA07G09420D PROTEIN 1 156 - -
Bpe11g01654 159 Gene3D - 86 158 IPR012340 -
Bpe11g01654 159 CDD S1_eIF5A 86 156 - -
Bpe11g01654 159 Gene3D - 1 85 IPR014722 -
Bpe11g01654 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe11g01654 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Bpe11g01654 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe11g01654 159 MobiDBLite consensus disorder prediction 1 21 - -
Bpe11g01654 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe11g01654 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe11g01654 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe11g01654 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe11g01654 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01654 Bpe-Chr11:12682755 Bpe14g00600 Bpe-Chr14:4994417 1.70E-45 dispersed
Bpe10g00890 Bpe-Chr10:14632518 Bpe11g01654 Bpe-Chr11:12682755 6.75E-116 wgd
Bpe11g01654 Bpe-Chr11:12682755 Bpe13g00302 Bpe-Chr13:10857672 1.39E-104 wgd
Bpe11g01654 Bpe-Chr11:12682755 Bpe15g00593 Bpe-Chr15:16847999 3.17E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01654 K03263 K02180 oeu:111405247 315.464