Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01669 ATGGGAAGAGGTAGGGTTCAGTTGAAGAGGATAGAGAACAAGATCAATCGGCAGGTTACATTTTCCAAAAGGAGAAGTGGATTGCTTAAAAAAGCTCATGAAATCTCTGTCTTGTGTGATGCTGATGTTGCTCTGATTGTTTTCTCCAACAAAGGGAAACTCTCTGAATACGCCTCTGATTCTGGCATGGAGAAAATACTGGAGCGTTATGAGAGATACTCCTTTGCTGAAAGAAAGCTGCTTTCCTCTGAACCTGAAGCGCAGCAGGTGAACTGGAATTTTGAGTATTCCAGACTCAAAGTAAAGATGGAGCAACTCCAGAAAAACCACAGGCACTATCTTGGAGAAGATTTGGATTCTTTGGGTCTCAAAGGTCTTCAAAATTTAGAGCAGGATCTGGATACTGCTCTTAAACAAATTCGAACAAGAAAAAACCAGCTAATGCATGAATCGATTTCTGCTCTTCAGAAGAAGGAGAAGTTCATACAGGAGCAAAACACCTTCCTAACAAAGCAGATCAAGGAGAAGGAGAAGAGTTTAGCACTGCAGGGTTCTGAGTGGAACCTCCAAAACATTGGCTCTAATGGCTCTTCTTTCTTACTACCAAACCCTCTTCCCTCTATAAACATTTGTGAAAATAACCCACAAGAAGATGAACAAGGAATGCCAAGGAATGAGCTGGATCTCACTCTGGAACCAGTTTATCAGTTCCACCTTGGATGCTTTGTTTCCTAA 735 41.63 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLSEYASDSGMEKILERYERYSFAERKLLSSEPEAQQVNWNFEYSRLKVKMEQLQKNHRHYLGEDLDSLGLKGLQNLEQDLDTALKQIRTRKNQLMHESISALQKKEKFIQEQNTFLTKQIKEKEKSLALQGSEWNLQNIGSNGSSFLLPNPLPSINICENNPQEDEQGMPRNELDLTLEPVYQFHLGCFVS 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12879739 12890800 - Bpe004982.1 Bpe11g01669 111814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01669 244 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe11g01669 244 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Bpe11g01669 244 Coils Coil 126 146 - -
Bpe11g01669 244 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe11g01669 244 Coils Coil 96 116 - -
Bpe11g01669 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe11g01669 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe11g01669 244 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Bpe11g01669 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe11g01669 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe11g01669 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe11g01669 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe11g01669 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Bpe11g01669 244 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 226 - -
Bpe11g01669 244 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bpe11g01669 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02307 Bpe-Chr2:23754926 Bpe11g01669 Bpe-Chr11:12879739 4.21E-69 dispersed
Bpe11g01669 Bpe-Chr11:12879739 Bpe13g01368 Bpe-Chr13:18936151 2.94E-72 dispersed
Bpe10g00914 Bpe-Chr10:14781063 Bpe11g01669 Bpe-Chr11:12879739 7.85E-88 wgd
Bpe11g01669 Bpe-Chr11:12879739 Bpe15g00567 Bpe-Chr15:16678416 1.45E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22140 PF01486 K-box 2.80E-27 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01669 K09264 - qsu:112022353 334.724