Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe11g01669 | ATGGGAAGAGGTAGGGTTCAGTTGAAGAGGATAGAGAACAAGATCAATCGGCAGGTTACATTTTCCAAAAGGAGAAGTGGATTGCTTAAAAAAGCTCATGAAATCTCTGTCTTGTGTGATGCTGATGTTGCTCTGATTGTTTTCTCCAACAAAGGGAAACTCTCTGAATACGCCTCTGATTCTGGCATGGAGAAAATACTGGAGCGTTATGAGAGATACTCCTTTGCTGAAAGAAAGCTGCTTTCCTCTGAACCTGAAGCGCAGCAGGTGAACTGGAATTTTGAGTATTCCAGACTCAAAGTAAAGATGGAGCAACTCCAGAAAAACCACAGGCACTATCTTGGAGAAGATTTGGATTCTTTGGGTCTCAAAGGTCTTCAAAATTTAGAGCAGGATCTGGATACTGCTCTTAAACAAATTCGAACAAGAAAAAACCAGCTAATGCATGAATCGATTTCTGCTCTTCAGAAGAAGGAGAAGTTCATACAGGAGCAAAACACCTTCCTAACAAAGCAGATCAAGGAGAAGGAGAAGAGTTTAGCACTGCAGGGTTCTGAGTGGAACCTCCAAAACATTGGCTCTAATGGCTCTTCTTTCTTACTACCAAACCCTCTTCCCTCTATAAACATTTGTGAAAATAACCCACAAGAAGATGAACAAGGAATGCCAAGGAATGAGCTGGATCTCACTCTGGAACCAGTTTATCAGTTCCACCTTGGATGCTTTGTTTCCTAA | 735 | 41.63 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSNKGKLSEYASDSGMEKILERYERYSFAERKLLSSEPEAQQVNWNFEYSRLKVKMEQLQKNHRHYLGEDLDSLGLKGLQNLEQDLDTALKQIRTRKNQLMHESISALQKKEKFIQEQNTFLTKQIKEKEKSLALQGSEWNLQNIGSNGSSFLLPNPLPSINICENNPQEDEQGMPRNELDLTLEPVYQFHLGCFVS | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 12879739 | 12890800 | - | Bpe004982.1 | Bpe11g01669 | 111814 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe11g01669 | 244 | Pfam | K-box region | 86 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bpe11g01669 | 244 | CDD | MADS_MEF2_like | 2 | 74 | IPR033896 | GO:0000977|GO:0045944 | |
Bpe11g01669 | 244 | Coils | Coil | 126 | 146 | - | - | |
Bpe11g01669 | 244 | ProSiteProfiles | K-box domain profile. | 89 | 179 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bpe11g01669 | 244 | Coils | Coil | 96 | 116 | - | - | |
Bpe11g01669 | 244 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01669 | 244 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01669 | 244 | Gene3D | - | 13 | 85 | IPR036879 | GO:0003677|GO:0046983 | |
Bpe11g01669 | 244 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01669 | 244 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01669 | 244 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01669 | 244 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bpe11g01669 | 244 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 226 | - | - | |
Bpe11g01669 | 244 | PANTHER | TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A | 1 | 226 | - | - | |
Bpe11g01669 | 244 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677|GO:0046983 | |
Bpe11g01669 | 244 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g02307 | Bpe-Chr2:23754926 | Bpe11g01669 | Bpe-Chr11:12879739 | 4.21E-69 | dispersed | |
Bpe11g01669 | Bpe-Chr11:12879739 | Bpe13g01368 | Bpe-Chr13:18936151 | 2.94E-72 | dispersed | |
Bpe10g00914 | Bpe-Chr10:14781063 | Bpe11g01669 | Bpe-Chr11:12879739 | 7.85E-88 | wgd | |
Bpe11g01669 | Bpe-Chr11:12879739 | Bpe15g00567 | Bpe-Chr15:16678416 | 1.45E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22140 | PF01486 | K-box | 2.80E-27 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe11g01669 | K09264 | - | qsu:112022353 | 334.724 |