Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01675 ATGGGTGATCTTTCAAACGTTGATTTATTAAGTAATCTGCCTTCTAATATTATAGATTGTATTCTTACTCGATTACCAATCGGAGATGCTGTTAGAACAAGCATCCTGTCAAGTGTATGGAGGTATGAATGGTCTAAGCTGACCCATCTGGTCTTTACTGATGAATGCGTCCCTTCACATAAGGATATTCAGGAAGGCCTCGTAAATTTTGTAAGGCAAACTCTTTTTCTGCACCAAGGACCAATTCACAAGTTTCATCTCTCAAGTGAGTACTTGAGAGGCTGTCCGGATTTAGACCAATGGCTTCTTTTCCTTTCGAGAAACGAAATCAAAGAAATTTACATTGAATTGGGAGACGATTGGTTTGTGGTGCCTTCTAGTCTTTTTCGTTGTAAATGGTTGACCCGATTGGAGTTGTATCGTTGTGAACTAGATCTACCCGCTTCGTTTAGCGAGTTTCCCAATTTGAAAAGTCTTAGACTTAATGAAGTTTCAATTTTACCAGAAGTCGCTGAACGCCTAATTTCCAGTAGCCCGCTTCTTAAGAGCTTGACATTGTCATACATTGATTGTTTTGTTCTTAATATCTGTTCTCCAAATCTCAAACATTTATGTCTAGAAGGAGAATTTAAGGAAATACGCCTTGGAAACACTCCCCTTTTGATTGCAATATCCGTTGAATTATACATGAATGAAGACATTTCTGAACATTTTGAGTTCAGTTCAAGTTGCAATCTTATCGAGTTTTTGGGTGGTGTCCCCCACCTCGAGAGACTCACCGGACGTGTTTATTTTACAAAGTATTTGAGCATAGGTAACCTTTCAGGAATTCTTCCAATTAAGTTCAACCATTTAAAGATTATAAAACTGTGTCAAGTCAATTTCGACGATATGAAAGAGATACTCGTTGTTCTTCGTTTGGTCACCCACTCTCCAAATTTGAAGGAACTCCACCTTGGGGGTTCCAATGCAACAGCTTCAACAGAAGAACCTGATTTGGATTTCTGGGATGTGGAATGCCCCTCAAATTGCAAATTCGAGAAACTCAAAGTTATCAACATGACAGATTTGTCCGGTTTGCCACAGGAGATGGAATTTACCAAATTTTTGCTTTGCAGGTCACCTGTGCTCGAGACTATGAGTATACGACCTTGTGTCTACGTCACGGATGGACAGTTGAATATGTTGATCGAGTTGGTGAGATTTAAACGTGCTTCTCCTCAGGCCGAAATCATATTTCGGCAAGCTTAA 1251 39.57 MGDLSNVDLLSNLPSNIIDCILTRLPIGDAVRTSILSSVWRYEWSKLTHLVFTDECVPSHKDIQEGLVNFVRQTLFLHQGPIHKFHLSSEYLRGCPDLDQWLLFLSRNEIKEIYIELGDDWFVVPSSLFRCKWLTRLELYRCELDLPASFSEFPNLKSLRLNEVSILPEVAERLISSSPLLKSLTLSYIDCFVLNICSPNLKHLCLEGEFKEIRLGNTPLLIAISVELYMNEDISEHFEFSSSCNLIEFLGGVPHLERLTGRVYFTKYLSIGNLSGILPIKFNHLKIIKLCQVNFDDMKEILVVLRLVTHSPNLKELHLGGSNATASTEEPDLDFWDVECPSNCKFEKLKVINMTDLSGLPQEMEFTKFLLCRSPVLETMSIRPCVYVTDGQLNMLIELVRFKRASPQAEIIFRQA 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 12995547 12996986 + Bpe004988.1 Bpe11g01675 111820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01675 416 SUPERFAMILY RNI-like 12 355 - -
Bpe11g01675 416 PANTHER - 8 388 - -
Bpe11g01675 416 SMART 9598neu4hmm 343 414 IPR006566 -
Bpe11g01675 416 Gene3D Ribonuclease Inhibitor 85 407 IPR032675 -
Bpe11g01675 416 PANTHER F-BOX PROTEIN-LIKE 8 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01675 - - - tcc:18610121 534.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01675 Bpe-Chr11:12995547 Bpe14g00688 Bpe-Chr14:5418243 7.48E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1027 . . . . . . . . Cmo04g01632 . . Cma18g01071 Car04g01613 . . . Cpe01g01386 . . . . . . . Cla05g02358 Cam05g2527 Cec05g2554 Cco05g2595 Clacu05g2522 Cmu05g2384 Cre05g2499 . . . Cone9ag0506 . . . . . Blo11g00816 Bda07g01512 . Bpe11g01675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007651 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01675 Bpe_Chr11 FPKM 36.358944 36.446575 33.104259 34.333969 19.048933 16.837732 17.977777 35.884884 34.913509 35.817066