Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01677 ATGGCGTTTCATGCTTCAACTCGTTTCGCGACTCCGCTGCATCGCTGCACCCCTTCTTTCCTCCCCCACACCTCACCCAGACTCTTTTTTACTGGCGATGTACGGATCCCCAGGCTCACCTCTGTTTGTTCCCAACTGCCGGATTCCGACGGGCTCGTCTCCAAACGATCTGTCTCTTTGGAAGACTTTGATTCTCCGATCGCTGGCGGTCCTCCGTCTTCGTCGTCCGCTATTGATTTTCTCACCCTGTGCCATCGTCTTAAGACCACTAAAAGAAAAGGGTGGATCAATCATGGAATCAAAGGTCCTGAGTCAATTGCTGATCATATGTATCGCATGGCTTTGATGGGATTGATTGCTGACGACATTCCGGGTGTGAACAGAGAAAGGTGCATTAAGATTGCTATCGTACATGACATTGCAGAAGCTATTGTTGGAGATATAACACCATCTGATGGAGTGCCCAAAGAAGAAAAGAGCAGAAGAGAGTCGGCAGCATTAAATCAAATGTGTGAGGTTCTTGGTGGAGGGATGAGAGCTGAAGAGATCAAGGAACTTTGGGCAGAGTATGAAAACAATGCTTCTGTTGAGGCTAATCTTGTGAAAGATTTTGATAAAGTTGAAATGATTCTGCAAGCATTGGAATATGAAATGGAGCATGGGAAGGTTCTCGATGAATTCTACCTTTCGACGGCAGGAAAATTTCAGACTGCTATAGGAAAAAGTTGGGCTGCTGAGATCATTTCCAGAAGAAAAAGCTTGGAGAAATGGCGCAATTAA 780 45.77 MAFHASTRFATPLHRCTPSFLPHTSPRLFFTGDVRIPRLTSVCSQLPDSDGLVSKRSVSLEDFDSPIAGGPPSSSSAIDFLTLCHRLKTTKRKGWINHGIKGPESIADHMYRMALMGLIADDIPGVNRERCIKIAIVHDIAEAIVGDITPSDGVPKEEKSRRESAALNQMCEVLGGGMRAEEIKELWAEYENNASVEANLVKDFDKVEMILQALEYEMEHGKVLDEFYLSTAGKFQTAIGKSWAAEIISRRKSLEKWRN 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13034077 13043340 + Bpe004990.1 Bpe11g01677 111822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01677 259 Gene3D Hypothetical protein af1432 71 258 - -
Bpe11g01677 259 PANTHER UNCHARACTERIZED 14 255 IPR039356 GO:0002953
Bpe11g01677 259 SMART hd_13 102 219 IPR003607 -
Bpe11g01677 259 Pfam HD domain 84 237 IPR006674 -
Bpe11g01677 259 SUPERFAMILY HD-domain/PDEase-like 75 251 - -
Bpe11g01677 259 ProSiteProfiles HD domain profile. 106 210 IPR006674 -
Bpe11g01677 259 PANTHER METAL-DEPENDENT PHOSPHOHYDROLASE 14 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01677 K07023 YGK1, HDDC2; 5'-deoxynucleotidase [EC:3.1.3.89] - jre:109003814 358.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00500 Bpe-Chr4:3147089 Bpe11g01677 Bpe-Chr11:13034077 2.60E-91 dispersed
Bpe11g01677 Bpe-Chr11:13034077 Bpe02g00062 Bpe-Chr2:471015 6.29E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g214 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0488 Cone9ag0500 . . . . . Blo11g00818 Bda07g01514 . Bpe11g01677 . . . . . . . . . . Cpe13g00023 . Bhi12g01430 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001138 3 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 1 2 3 6 4 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01677 Bpe_Chr11 FPKM 4.488595 4.70119 4.39594 4.965569 7.144859 7.562212 6.59275 15.776235 20.12396 17.529142