Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01679 ATGTTTATGAGAGAAGCACTTGCTGAAGCCAAAAAGGCTGCTGATTTGTGGGAGGTGCCTGTCGGAGCTGTACTTGTGCGGCAAGGAAAAATTATTGCTAGGGGATTCAATCTGGTGGAGGAGTTGAGGGATTCCACTGCCCATGCTGAAATAATCTGTATTAGAGAAGCTTCAAATTTACTCAAATCATGGAGGCTTGCGGAGACTACTCTGTATGTGACGCTTGAGCCATGTCCCATGTGTGCGGGTGCGATATTGCAAGCACGAGTCGACACCCTTGTTTGGGGAGCACCAAATAAGCTTCTTGGAGCTGATGGCAGCTGGATTAGGCTTTTTCCCGACAGAGGAGAAGGAAATGGATCGCAAACGGCAGACAAACCGGCTGCTCCTGTCCATCCATTCCACCCAAATATGAGAGTTCGTCGAGGGGTACTATCGGCAGATTGTGCAGATGCGATGCAGCAATTTTTCCAGCGGAGGAGAAAGAAGGAGAAAGAAGAGGGCTCTCCCCCAGCTGCTCCCTCATGTCTCCCAGTTACACCCTCTACCGCCAAACTCATGAACAAAATGCATGATCTTTTCCATATGATGTTCTGTTTG 600 48.83 MFMREALAEAKKAADLWEVPVGAVLVRQGKIIARGFNLVEELRDSTAHAEIICIREASNLLKSWRLAETTLYVTLEPCPMCAGAILQARVDTLVWGAPNKLLGADGSWIRLFPDRGEGNGSQTADKPAAPVHPFHPNMRVRRGVLSADCADAMQQFFQRRRKKEKEEGSPPAAPSCLPVTPSTAKLMNKMHDLFHMMFCL 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13078565 13083273 + Bpe024857 Bpe11g01679 111824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01679 200 PANTHER TRNA(ADENINE(34)) DEAMINASE, CHLOROPLASTIC 1 190 - -
Bpe11g01679 200 SUPERFAMILY Cytidine deaminase-like 2 165 IPR016193 GO:0003824
Bpe11g01679 200 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1 190 - -
Bpe11g01679 200 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 1 119 IPR002125 -
Bpe11g01679 200 CDD nucleoside_deaminase 15 110 - -
Bpe11g01679 200 MobiDBLite consensus disorder prediction 159 181 - -
Bpe11g01679 200 Pfam MafB19-like deaminase 2 99 IPR028883 GO:0002100|GO:0008251
Bpe11g01679 200 Gene3D Cytidine Deaminase, domain 2 1 171 - -
Bpe11g01679 200 Hamap tRNA-specific adenosine deaminase [tadA]. 3 161 IPR028883 GO:0002100|GO:0008251
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01679 K11991 tadA; tRNA(adenine34) deaminase [EC:3.5.4.33] - pop:7489385 322.398
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00701 Bpe-Chr1:5246054 Bpe11g01679 Bpe-Chr11:13078565 1.65E-16 dispersed
Bpe02g01892 Bpe-Chr2:20925892 Bpe11g01679 Bpe-Chr11:13078565 3.25E-14 dispersed
Bpe11g01679 Bpe-Chr11:13078565 Bpe05g00270 Bpe-Chr5:15705971 4.15E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g220 . . . . . . Bma14g01686 . . Cmo18g01080 . Cma18g01058 . Car18g00983 Sed08g1290 Cpe09g00259 . Bhi07g01388 Tan04g0923 Cmetu02g0302 Lac13g0441 Hepe10g1853 . . Cla05g02348 Cam05g2519 Cec05g2546 Cco05g2588 Clacu05g2514 Cmu05g2376 Cre05g2492 Cone13ag0870 Cone19ag0871 . . Lsi04g00307 Csa05g02561 Chy10g01101 Cme10g00309 . Blo11g00821 Bda07g01517 . Bpe11g01679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010359 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01679 Bpe_Chr11 FPKM 18.101109 21.435379 9.378611 9.101999 3.267185 2.142612 2.877751 13.550651 11.491143 11.258096