Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe11g01690 | ATGGATGGAAGTAGCGTTGATGAAAGCACGGCAAGCGAATCCACCTCTATTTCTCCTGTTAGTCCGCTCGCTTTTCCGGTCACAAAGTGTTCTTCGCCGCCGGTGGGTCTGTCCAGAGTGCGCAGCGGAGCTAGTGTCGTCGTCGACTCCGATCCGTCCACCGGCGTTGAGGCGGAGTCGAGAAAGCTGCCTTCTTCCAGGTTCAAGGGGGTGGTGCCGCAGCCGAATGGGCGGTGGGGAGCGCAGATTTACGAGAAGCACCAGCGAGTCTGGCTCGGCACTTTCAACGAGGAGGACGAGGCAGCCAGAGCCTACGACATCGCCGCCCAACGCTTCCGCGGTCGCGATGCCGTCACTAATTTCAAGCCACTTGCCGACACCGCCGACGACGAAATCGAGTCGGCGTTTCTTAGTTCCCATTCGAAATCTGAGATTGTCGATATGCTACGTAAGCATACTTACCGCGATGAGCTGCAGCAGAGCAAACGAAAAAATGGGTTACTCGACGGCTCCGGGAAACGAAGATCCCTCGGGCTAACGGGCACAGGACAGGACCGAGACTCCAAGACCCGTGAACTGCTTTTCGAGAAGGCGGTGACGCCCAGCGACGTTGGAAAACTGAACCGCCTGGTGATCCCGAAGCAGCACGCGGAGAAACATTTCCCGTTGCAGAGCGGAACCGCGTCATCCAATGGCGTGCTTCTCAACCTCGAGGATATCGGAGGAAAAGTATGGCGATTCCGCTACTCCTACTGGAATAGCAGCCAAAGCTACGTTTTGACAAAAGGGTGGAGCCGCTTCGTCAAGGAGAAGAATCTCCACGCTGGAGACGTAGTCTCCTTTCTCCGGTCAACCGGACAGGATAAACAGCTCTACATTGACTTTAAGGCTCCGAATGGATCGGCGGCGATGATGGGTGAATCAAACCCAGCGCCAACGGTTCAAGTAGTAAGACTCTTTGGGGTGAACATTTTGAAAGTACCTGGACATGGTGGTAGTAATATGGACGGCGCCGTCTTAATGGGTGGTTGCTATGGGAAAAGAATAAGAGATCAGGTTGAGCTTTTAGCTTTAGAGTGCAGTAAAAAACAAAGGGTAGTCGGAGCTTTGTGA | 1113 | 54.18 | MDGSSVDESTASESTSISPVSPLAFPVTKCSSPPVGLSRVRSGASVVVDSDPSTGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLADTADDEIESAFLSSHSKSEIVDMLRKHTYRDELQQSKRKNGLLDGSGKRRSLGLTGTGQDRDSKTRELLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSGTASSNGVLLNLEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLHAGDVVSFLRSTGQDKQLYIDFKAPNGSAAMMGESNPAPTVQVVRLFGVNILKVPGHGGSNMDGAVLMGGCYGKRIRDQVELLALECSKKQRVVGAL | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 13188925 | 13190037 | + | Bpe005004.1 | Bpe11g01690 | 111835 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe11g01690 | 370 | SUPERFAMILY | DNA-binding domain | 66 | 122 | IPR016177 | GO:0003677 | |
Bpe11g01690 | 370 | CDD | B3_DNA | 194 | 281 | IPR003340 | GO:0003677 | |
Bpe11g01690 | 370 | SMART | rav1_2 | 67 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe11g01690 | 370 | SUPERFAMILY | DNA-binding pseudobarrel domain | 191 | 288 | IPR015300 | - | |
Bpe11g01690 | 370 | Gene3D | AP2/ERF domain | 66 | 123 | IPR036955 | GO:0003700|GO:0006355 | |
Bpe11g01690 | 370 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 122 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe11g01690 | 370 | Pfam | AP2 domain | 67 | 114 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe11g01690 | 370 | PANTHER | PROTEIN RAV1, PUTATIVE-RELATED | 1 | 370 | - | - | |
Bpe11g01690 | 370 | SMART | B3_2 | 195 | 299 | IPR003340 | GO:0003677 | |
Bpe11g01690 | 370 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Bpe11g01690 | 370 | MobiDBLite | consensus disorder prediction | 157 | 190 | - | - | |
Bpe11g01690 | 370 | CDD | AP2 | 66 | 121 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe11g01690 | 370 | Pfam | B3 DNA binding domain | 195 | 293 | IPR003340 | GO:0003677 | |
Bpe11g01690 | 370 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Bpe11g01690 | 370 | MobiDBLite | consensus disorder prediction | 41 | 62 | - | - | |
Bpe11g01690 | 370 | Gene3D | - | 183 | 306 | IPR015300 | - | |
Bpe11g01690 | 370 | ProSiteProfiles | B3 DNA-binding domain profile. | 195 | 299 | IPR003340 | GO:0003677 | |
Bpe11g01690 | 370 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 1 | 370 | IPR044800 | GO:0003700 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe10g00947 | Bpe11g01690 | CCT | |
Bpe10g00947 | Bpe11g01690 | ECH | |
Bpe02g02282 | Bpe11g01690 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe11g00381 | Bpe-Chr11:2890171 | Bpe11g01690 | Bpe-Chr11:13188925 | 2.11E-45 | dispersed | |
Bpe11g01690 | Bpe-Chr11:13188925 | Bpe13g00799 | Bpe-Chr13:14351945 | 8.10E-42 | dispersed | |
Bpe01g00642 | Bpe-Chr1:4328387 | Bpe11g01690 | Bpe-Chr11:13188925 | 1.16E-53 | transposed | |
Bpe02g01300 | Bpe-Chr2:16518949 | Bpe11g01690 | Bpe-Chr11:13188925 | 2.58E-12 | transposed | |
Bpe03g00937 | Bpe-Chr3:29034603 | Bpe11g01690 | Bpe-Chr11:13188925 | 5.00E-11 | transposed | |
Bpe10g00947 | Bpe-Chr10:15006814 | Bpe11g01690 | Bpe-Chr11:13188925 | 0 | transposed | |
Bpe11g00900 | Bpe-Chr11:6679200 | Bpe11g01690 | Bpe-Chr11:13188925 | 1.38E-54 | transposed | |
Bpe11g01690 | Bpe-Chr11:13188925 | Bpe02g02282 | Bpe-Chr2:23612580 | 2.79E-151 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
22142 | PF02362 | B3 | 7.10E-28 | CL0405 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe11g01690 | K09287 | - | pvy:116107511 | 489.574 |