Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01696 ATGGGTTCAGATTCGGATGATTCTCGTCGTAAGCACCGGCGTTCCGCTTCCGATGACGACGCGGAGAAGTCTTCAAAGCGCCACAAACACCGGCACCATCGTAGCCACCACCGCCATCGTCACAGAAGCAGTAAGCACGATGAGAAACATAGTCGCGATGATGATAAATTTGATATCTCTGGCTCTATTCCTCCTCTTGCTTCGAATGGAAATCAGCTGGATGACGAGTTGGAGGAAGGTGAAATTCTCGAGGAGGATTTGTGCGTGGGTAAAGAGGGTAATGCGACGATTCCTGTGAATTGTAATGCAGTTGAGTATGAAGGTGATGAAACTCGTCGTCAGGCTGACGAGCCAAATCTGGTACACAGTTACGGGGATGGACCATCTGATGGGGATGCTAATATATCAGTGAAAGATCTGGGAATTGCTACAAGACCAATGTCATTGAGAGATGAAAATATTGACAAGGGTTTGTTCTGTAATTTGACAATGGACAAGGATGACAAAAAAAGTCATGCCAGTGGTAAAAGTCAGGCTGGTTTTCGAGTCCCCAGGAAGGAAGGGTCTGATTCTCAATCACAATCAGAATTCGTTTTTGGTTCTGAAGACCTTGTGAATGGGGATTTGGGTCTCGAATCTCACAAGGGGAACCATAGGCAGCACAGAGAATTTAGCTCTCCATACAAAAAAAATGTTGAACGGAGGAGTTACCAAGATGAGGAAAAGATTGATGGAGGCAGATCAAAACACATGAAGGATTCGTCATCTGAAAGCCCAGATGACAGGTATGAGTCTTTGGTCCATTCACCATGTCTTAAGGAACGTCTTCATGCTGTCCATGGTACCGGCAGATCAAGATCAAATGGCACTTCAAAGGAGAGAACTCATTCACGAGGGCTTGTAGAAGATGAGGTTTGGTCAAAGAGAAGTCGACATAGTGGTTTGGATACCTTACTTTATGATGACAAAAGTAAAATTGAGGATGAGTTGGATGAAAAGACGATTTTAGTTGTTAAAGAAGACAGCAAGTCGTATGGTAGGGATACAAAGGACAGGAGGAGCAAGGAGAGAGAAATAGCTAGAGACTCAAAAAAAGTAATTGACAGAACTAGAATCAAAGACAGGGAATTGGACAGATATAACAGTGAGGAGAAAGATCGAGAAATGAGCAGAGATAGGGAACAAAGTAAATATGACATCGGGGTGAGAGATCGCGCTGGAAGTAGGGACAGGAAGAGGGAGACATACCTGGACAGAAATGGAGAATATGGTGGAGATAAATATAAGAGGAGAGAGAGGGACAGAGGTTCGGATAGAGATAGTAACAAGGAAAAGGAAAGGGAGTGGAGCAATGAAAAGTTTAGGTTCACCGATAGGGACAGGGATCAAGAAAAAGATAAGGAGAAGCGAAGGGAACAGGATAGGATGAGGGGTAGAGAGAGGGAATGGGAAAGAGAGAGGAATAGGGGGAGGCGAGAAGGTAAAAGTAAAGAAATAGATAGGGTCCTTGAGAGTGACAGGGAAAAGTATGCGAATCTTGAAGCGAGCCATAAGAATGAAGATTGCCAAAAACATTATAGGCGGTCTCGACATGATAGGAGTGAATACAACCTGAATGAAATCAGGAGAGATTCAGAAACTTATAATAATTCTAAGATAAATTTATTTGAAGCGGACAAAAAGAAAGTAATAAGCAATCAAGACAGGGAGGAAGACTATGAAGAGATGGTAGAACTACAGGTTGTAGATCAAGAAGAGGAAGATCTCAACAGAATCAAGGAGGAGAGTAAAAGACGGAGGCTTGCTATCCTTGAGAAATACAAAAATAGGCAGTTAGACAGCCCAGCTCAGCCTCTTTTGAAGGAAATGAAAAAAGATAATGAATCTGCAGAAGGTAAAGAAGGATCCGTCTCAGCTGCTTTGGAAGTAGTAGATGGTGTGGATGACAATGTTGCAGATTCATCTTTTGCTGTGGAAAAATTGCCTTCACAAAATGCAGTTTCTACTTCTGGAAGAAATTTTGGTGCCAGGGGACTTGGTGAGGGTACTCCAAAGAGTGAGAGATCGGATGAAATATTTTGCGATGACATTTTTGGAGATACACCAACTGCAGTTCGTAAAATGGGAAAAGGAGATGGCTTACAGATTGAAAGAAACGGTCTTCATGATAATTGGGATGATGCAGATGGGTATTACAGCTACCGGTTTGGGGAGGTATTTGATAATAGATATGAAGTCACTGCTGCCCATGGGAAAGGTGTCTTTTCAACTGTTGTTCGTGCAAAGAATCTTAAGATGGGTAATGGTGAACCAGAAGAAGTGGCGATAAAAATTTTACGTAGTAATGAAACAATGTACAAGGCTGGTTTGGAGGAGCTAGTCATATTGAAGAAGTTAGTAGGTGCAGATCCAGATGACAAGCGTCACTGTGTTCGTTTTCTTTCCAGTTTTAAGTACAGAAATCATCTTTGTTTAGTTTTTGAATCTCTTCATATGAATCTCCGTGAGGTTTTGAAGAAGTTTGGGCGCAACATTGGTCTTAAGCTAACAGCTGTGAGAGCATATGCTAAACAGCTTTTTATTGCATTGAAGCATCTAAAAAATTGTGGTGTTCTTCATTGTGATATAAAGCCAGATAACATGCTGGTCAATGAGGGAAAAAATGTTCTGAAGCTTTGTGATTTTGGTAATGCCATGTTTGCTGGTAAAAATGAAATCACACCATATCTTGTCAGCCGCTTTTATCGTGCTCCTGAAATAATTTTGGGGTTATCATACGATCATCCAATGGATATTTGGTCTGTAGGTTGTTGTTTGTATGAGCTTTACACAGGCAAAGTTCTTTTTCCTGGTCCAACAAACAATGACATGTTACGTCTTCACATGGAATTGAAAGGCCCTTTTCCAAAGAAGATGCTTCGAAGGGTGAGTAATTACTATTATCCAGATTTTGTGTTTTTACAGGGAGGATTCACTGATCAACATTTTGACCAGGATTTGAACTTCCATGCGACAGAAGAAGATCCTGTTACTAAAAAGGCAATAAAGCGGATAATTGTCAATATCAAGCCAAAAGATATTGGATCAATTATAACAGGATATCCTGGCGAAGACCCAAAGATGATAAACAATTTTAAGGATCTTTTGGACAAAATTTTTGTTCTGGATCCTGACAAGAGAATGACAGTATCACAGGCATTAAGCCATCCTTTCATCACGGGCAAGTGA 3228 41.26 MGSDSDDSRRKHRRSASDDDAEKSSKRHKHRHHRSHHRHRHRSSKHDEKHSRDDDKFDISGSIPPLASNGNQLDDELEEGEILEEDLCVGKEGNATIPVNCNAVEYEGDETRRQADEPNLVHSYGDGPSDGDANISVKDLGIATRPMSLRDENIDKGLFCNLTMDKDDKKSHASGKSQAGFRVPRKEGSDSQSQSEFVFGSEDLVNGDLGLESHKGNHRQHREFSSPYKKNVERRSYQDEEKIDGGRSKHMKDSSSESPDDRYESLVHSPCLKERLHAVHGTGRSRSNGTSKERTHSRGLVEDEVWSKRSRHSGLDTLLYDDKSKIEDELDEKTILVVKEDSKSYGRDTKDRRSKEREIARDSKKVIDRTRIKDRELDRYNSEEKDREMSRDREQSKYDIGVRDRAGSRDRKRETYLDRNGEYGGDKYKRRERDRGSDRDSNKEKEREWSNEKFRFTDRDRDQEKDKEKRREQDRMRGREREWERERNRGRREGKSKEIDRVLESDREKYANLEASHKNEDCQKHYRRSRHDRSEYNLNEIRRDSETYNNSKINLFEADKKKVISNQDREEDYEEMVELQVVDQEEEDLNRIKEESKRRRLAILEKYKNRQLDSPAQPLLKEMKKDNESAEGKEGSVSAALEVVDGVDDNVADSSFAVEKLPSQNAVSTSGRNFGARGLGEGTPKSERSDEIFCDDIFGDTPTAVRKMGKGDGLQIERNGLHDNWDDADGYYSYRFGEVFDNRYEVTAAHGKGVFSTVVRAKNLKMGNGEPEEVAIKILRSNETMYKAGLEELVILKKLVGADPDDKRHCVRFLSSFKYRNHLCLVFESLHMNLREVLKKFGRNIGLKLTAVRAYAKQLFIALKHLKNCGVLHCDIKPDNMLVNEGKNVLKLCDFGNAMFAGKNEITPYLVSRFYRAPEIILGLSYDHPMDIWSVGCCLYELYTGKVLFPGPTNNDMLRLHMELKGPFPKKMLRRVSNYYYPDFVFLQGGFTDQHFDQDLNFHATEEDPVTKKAIKRIIVNIKPKDIGSIITGYPGEDPKMINNFKDLLDKIFVLDPDKRMTVSQALSHPFITGK 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13239890 13246175 - Bpe005010.1 Bpe11g01696 111841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01696 1075 ProSitePatterns Serine/Threonine protein kinases active-site signature. 871 883 IPR008271 GO:0004672|GO:0006468
Bpe11g01696 1075 CDD STKc_PRP4 743 1072 IPR044092 GO:0004674|GO:0006468|GO:0045292
Bpe11g01696 1075 MobiDBLite consensus disorder prediction 110 136 - -
Bpe11g01696 1075 MobiDBLite consensus disorder prediction 208 310 - -
Bpe11g01696 1075 MobiDBLite consensus disorder prediction 1 25 - -
Bpe11g01696 1075 PANTHER DUAL SPECIFICITY PROTEIN KINASE 408 1075 - -
Bpe11g01696 1075 Gene3D Transferase(Phosphotransferase) domain 1 804 1073 - -
Bpe11g01696 1075 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 408 1075 - -
Bpe11g01696 1075 ProSiteProfiles Protein kinase domain profile. 744 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g01696 1075 Pfam Protein kinase domain 746 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g01696 1075 MobiDBLite consensus disorder prediction 26 46 - -
Bpe11g01696 1075 SMART serkin_6 744 1072 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g01696 1075 MobiDBLite consensus disorder prediction 1 79 - -
Bpe11g01696 1075 MobiDBLite consensus disorder prediction 338 531 - -
Bpe11g01696 1075 SUPERFAMILY Protein kinase-like (PK-like) 731 1074 IPR011009 -
Bpe11g01696 1075 MobiDBLite consensus disorder prediction 165 310 - -
Bpe11g01696 1075 Gene3D Phosphorylase Kinase; domain 1 714 803 - -
Bpe11g01696 1075 MobiDBLite consensus disorder prediction 662 688 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01696 K08827 PRPF4B; serine/threonine-protein kinase PRP4 [EC:2.7.11.1] - qsu:112020042 1026.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01081 Bpe-Chr7:16174130 Bpe11g01696 Bpe-Chr11:13239890 4.78E-41 dispersed
Bpe11g01696 Bpe-Chr11:13239890 Bpe12g00674 Bpe-Chr12:12388326 3.48E-37 dispersed
Bpe11g01696 Bpe-Chr11:13239890 Bpe12g00615 Bpe-Chr12:11839240 9.52E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003313 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 10 7 1 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63606 PF00069 Pkinase 6.80E-46 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01696 Bpe_Chr11 FPKM 20.194363 20.903969 3.273444 2.08754 12.792786 10.783002 11.901528 0.0 0.0 0.0