Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01702 ATGGTGGGTAAGAAGAAAGGTACCTCAGTGCTTGATGATCTGATTGAGAAAGCAGGAGGTTGCGCCGTCATTGATGGAGGTTTCGCTACTCAGCTCGAGAGACACGGCGCTTACATTAACGACCCACTTTGGAGCGCTCTCTGCCTCATCAAAGACTCCCATCTCATCAAGAAGGTCCATTTGGAGTACTTAGAGGCTGGTGCCGATATTATGGTCACTTCGTCTTACCAGGCTACTATTCCAGGATTTATCTCCAGGGGACTATCTGTTGAAGAAGCAGAATCTTTGCTGAGAAAGAGTGTTCAATTAGCCACTGAAGCACGTGATAGCTTCTGGGATGCAGTGAAAAGGATCTCTGGACATGGATATAACAGGGCTTTGGTTGCAGCCTCCATTGGAAGCTATGGAGCTTATCTTGCCGATGGTTCAGAATACAGTGGGTGTTATGGACCAGATGTGAATATCGATAAGTTGCGGGATTTCCACAGGCGCCGACTGCAAATTCTCATAGAAGCCGGGCCTGATTTACTTGCCTTCGAAACAATTCCCAATAAGCTCGAAGTACAGGCCTGCGTTGAGTTGCTCGAAGAAGAAAACGTTCAAATCCCGTCGTGGATATGCTTCGGTTGTGTAGATGGTGAAAATGCACCATCTGGAGAGAGTTTTAGGGAGTGCCTTGCTATAATAAATTCAAGCAAGAAAGTAAATGCAGTTGGAATAAATTGTGCTCCTCCCCAGTTTATTGAATCTCTCATCTGCAAATTTAAGAAATTGACAGAGAAGCCGATCGTTGTTTACCCAAATAGCGGTGAAGTGTGGGACGGCAAGGCCAAGAGATGGCTGCCATCAAAGTGTTTCGGTGACGAAAATTTTGAGTTATATGCAATAAGATGGCGGGATTTGGGGGCACAACTCATAGGTGGCTGTTGCCGAACTACTCCGACCACGATTAAAGCTATATCAAAGGTTTTGAAACATTGTGATCAGTGA 990 45.56 MVGKKKGTSVLDDLIEKAGGCAVIDGGFATQLERHGAYINDPLWSALCLIKDSHLIKKVHLEYLEAGADIMVTSSYQATIPGFISRGLSVEEAESLLRKSVQLATEARDSFWDAVKRISGHGYNRALVAASIGSYGAYLADGSEYSGCYGPDVNIDKLRDFHRRRLQILIEAGPDLLAFETIPNKLEVQACVELLEEENVQIPSWICFGCVDGENAPSGESFRECLAIINSSKKVNAVGINCAPPQFIESLICKFKKLTEKPIVVYPNSGEVWDGKAKRWLPSKCFGDENFELYAIRWRDLGAQLIGGCCRTTPTTIKAISKVLKHCDQ 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13311128 13313911 + Bpe005015.1 Bpe11g01702 111847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01702 329 Gene3D - 11 323 IPR036589 -
Bpe11g01702 329 PIRSF BHMT 1 261 IPR017226 GO:0008168|GO:0008270|GO:0009086
Bpe11g01702 329 PIRSF BHMT 279 327 IPR017226 GO:0008168|GO:0008270|GO:0009086
Bpe11g01702 329 PANTHER ZGC:172121 5 326 - -
Bpe11g01702 329 PANTHER HOMOCYSTEINE S-METHYLTRANSFERASE 1 5 326 - -
Bpe11g01702 329 ProSiteProfiles Homocysteine-binding domain profile. 10 324 IPR003726 -
Bpe11g01702 329 SUPERFAMILY Homocysteine S-methyltransferase 18 327 IPR036589 -
Bpe11g01702 329 Pfam Homocysteine S-methyltransferase 23 323 IPR003726 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01702 K00547 mmuM, BHMT2; homocysteine S-methyltransferase [EC:2.1.1.10] - vvi:100247323 572.007
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe06g00457 Bpe-Chr6:15946295 Bpe11g01702 Bpe-Chr11:13311128 6.99E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g306 . . . . . . Bma14g01711 . Cmo04g01579 Cmo18g01031 . Cma18g01021 Car04g01560 Car18g00940 Sed06g1889 Cpe09g00302 Cpe01g01343 Bhi07g01323 Tan04g0851 Cmetu10g0078 Lac13g0497 Hepe01g1191 . . Cla05g02299 Cam05g2472 Cec05g2494 Cco05g2537 Clacu05g2467 Cmu05g2329 Cre05g2446 Cone13ag0830 Cone19ag0835 . . Lsi04g00254 Csa05g02612 Chy10g01147 Cme10g00260 . Blo11g00847 Bda07g01538 . Bpe11g01702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000691 3 4 3 2 3 1 3 2 1 3 3 1 5 3 3 4 2 4 4 1 3 3 3 3 3 2 2 7 14 3 98
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01702 Bpe_Chr11 FPKM 33.762638 33.025826 87.89093 84.916595 97.77562 100.29541 101.979881 86.850113 87.17128 86.441063