Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01706 ATCGAGAGAGAATCCCTAAAAATGGAGGTGGCAGAAGCAGCAACTGGTAATCAATTGAAGCTGTATTCGTATTTTAGGAGTTCATGCTCCTTTCGCGTTCGAATCGCCCTGAATTTGAAAGGTCTTAAATACGACTACCACGCCGTCAACTTGCTCAAAGGGGAGCAACACGACCCCGAGTTTACTAAGCTCAATCCTATTGGCTACGTACCTGTGCTGGTTGACGGAAATACAGTACTTGCCGACTCTTTTGCCATCTTAATGTATCTGGACTCTAAGTATCCTCAGCATCCACTTCTGCCTCAGAACCTTTACACAAGAGCAATCAACTATCAGGCTGCAAATATTGTATCTTCAAGCATACAACCTCTTCAGAATATACCTGTCTTGAAGTATCTAGACGAAAATGTTGGTCCTGATGAAAAACTTCTCTGGGTTCAACATCATATTGGAAAAGGTTTTGCAGCACTCGAAAAGCTGTTAAAAGAGCATGCTGGAGAATATGCTACTGGTGATGAAGTTTTCTTGGCAGACATATTTCTGGCACCTCAGATTCATGCAGGGGTTACAAGATTCAGTATTGACATGTCCCAGTTCCCTCTTTTGTCCACATTGTACGAGGCTTATAAAGAGATACCAGCTTTTCGAGATGCCATGCCCGAAAATCAACCTGATTTTCCTCCAAAAGTCATCAACTGA 699 42.63 IERESLKMEVAEAATGNQLKLYSYFRSSCSFRVRIALNLKGLKYDYHAVNLLKGEQHDPEFTKLNPIGYVPVLVDGNTVLADSFAILMYLDSKYPQHPLLPQNLYTRAINYQAANIVSSSIQPLQNIPVLKYLDENVGPDEKLLWVQHHIGKGFAALEKLLKEHAGEYATGDEVFLADIFLAPQIHAGVTRFSIDMSQFPLLSTLYEAYKEIPAFRDAMPENQPDFPPKVIN 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13332090 13336352 + Bpe005019.1 Bpe11g01706 111851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01706 232 SFLD Glutathione Transferase (cytosolic) 19 210 IPR040079 -
Bpe11g01706 232 SUPERFAMILY GST C-terminal domain-like 98 228 IPR036282 -
Bpe11g01706 232 CDD GST_C_Zeta 107 223 IPR034330 -
Bpe11g01706 232 Gene3D Glutaredoxin 16 102 - -
Bpe11g01706 232 PANTHER MALEYLACETOACETATE ISOMERASE 16 227 - -
Bpe11g01706 232 Pfam Glutathione S-transferase, N-terminal domain 21 97 IPR004045 -
Bpe11g01706 232 Gene3D - 103 229 - -
Bpe11g01706 232 PANTHER S-CRYSTALLIN-RELATED 16 227 - -
Bpe11g01706 232 ProSiteProfiles Glutaredoxin domain profile. 7 107 - -
Bpe11g01706 232 SFLD Main (cytGST) 19 210 - -
Bpe11g01706 232 SUPERFAMILY Thioredoxin-like 17 102 IPR036249 -
Bpe11g01706 232 TIGRFAM maiA: maleylacetoacetate isomerase 20 226 IPR005955 GO:0003824|GO:0005737|GO:0009072
Bpe11g01706 232 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 17 98 IPR004045 -
Bpe11g01706 232 CDD GST_N_Zeta 19 91 IPR034333 -
Bpe11g01706 232 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 103 228 IPR010987 -
Bpe11g01706 232 Pfam Glutathione S-transferase, C-terminal domain 142 214 IPR004046 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01706 K01800 maiA, GSTZ1; maleylacetoacetate isomerase [EC:5.2.1.2] - jre:108996938 336.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01239 Bpe-Chr11:9239967 Bpe11g01706 Bpe-Chr11:13332090 1.08E-11 dispersed
Bpe11g01706 Bpe-Chr11:13332090 Bpe13g00917 Bpe-Chr13:15139484 1.16E-94 dispersed
Bpe15g01095 Bpe-Chr15:20129788 Bpe11g01706 Bpe-Chr11:13332090 1.74E-06 dispersed
Bpe11g01706 Bpe-Chr11:13332090 Bpe02g00874 Bpe-Chr2:6728495 3.88E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g01706 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00515 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 5.1e-63 237.7
Bpe06g00513 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.7 9.6e-62 233.4
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 2.3e-63 238.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.4 3.3e-62 235.0
Bpe06g00513 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 5.4e-59 224.6
Bpe06g00515 . 5 206 Glutathione S-transferase Gene Family AT1G02950 55.2 9.1e-59 223.8
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.2 8.8e-60 226.9
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.0e-59 225.7
Bpe06g00515 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.8 2.3e-60 228.8
Bpe06g00513 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 4.0e-60 228.0
Bpe06g00513 . 1 213 Glutathione S-transferase Gene Family AT2G47730 58.9 1.9e-67 252.7
Bpe06g00515 . 1 213 Glutathione S-transferase Gene Family AT2G47730 57.9 1.2e-66 250.0
Bpe11g01239 . 1 212 Glutathione S-transferase Gene Family AT3G03190 58.5 6.7e-71 263.8
Bpe11g01239 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.3 7.1e-73 270.4
Bpe02g00874 . 3 216 Glutathione S-transferase Gene Family AT3G09270 57.2 9.1e-71 263.5
Bpe12g00457 . 3 226 Glutathione S-transferase Gene Family AT1G74590 50.4 1.6e-65 246.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.9 1.0e-90 329.7
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G78380 64.7 1.2e-83 306.2
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78380 64.4 4.6e-83 304.3
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78370 63.1 2.7e-80 295.0
Bpe09g00277 . 1 218 Glutathione S-transferase Gene Family AT1G78370 61.9 1.0e-79 293.1
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78370 61.2 3.4e-78 288.1
Bpe09g00278 . 1 216 Glutathione S-transferase Gene Family AT1G78340 64.8 4.9e-85 310.8
Bpe09g00277 . 1 217 Glutathione S-transferase Gene Family AT1G78340 63.6 1.5e-81 299.3
Bpe03g00861 . 2 217 Glutathione S-transferase Gene Family AT1G78340 59.7 3.4e-78 288.1
Bpe09g00278 . 1 214 Glutathione S-transferase Gene Family AT1G78320 53.7 1.9e-61 232.3
Bpe03g00861 . 2 215 Glutathione S-transferase Gene Family AT1G78320 52.3 1.5e-58 222.6
Bpe09g00277 . 1 211 Glutathione S-transferase Gene Family AT1G78320 51.2 3.2e-56 214.9
Bpe09g00278 . 1 219 Glutathione S-transferase Gene Family AT1G17180 64.4 1.8e-87 318.9
Bpe03g00861 . 2 220 Glutathione S-transferase Gene Family AT1G17180 63.0 1.2e-83 306.2
Bpe09g00277 . 1 215 Glutathione S-transferase Gene Family AT1G17180 61.9 8.7e-82 300.1
Bpe09g00278 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.6 3.2e-76 281.6
Bpe03g00861 . 4 218 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00277 . 3 215 Glutathione S-transferase Gene Family AT1G17190 54.9 9.0e-71 263.5
Bpe09g00278 . 3 214 Glutathione S-transferase Gene Family AT3G43800 53.7 1.3e-64 243.0
Bpe09g00277 . 3 217 Glutathione S-transferase Gene Family AT3G43800 52.5 1.4e-63 239.6
Bpe03g00861 . 4 215 Glutathione S-transferase Gene Family AT3G43800 50.5 2.1e-59 225.7
Bpe09g00278 . 4 219 Glutathione S-transferase Gene Family AT1G53680 59.2 2.4e-71 265.4
Bpe09g00277 . 4 217 Glutathione S-transferase Gene Family AT1G53680 58.1 2.3e-69 258.8
Bpe03g00861 . 6 220 Glutathione S-transferase Gene Family AT1G53680 54.8 5.0e-69 257.7
Bpe11g01706 . 60 231 Glutathione S-transferase Gene Family AT2G02390 57.0 8.4e-57 216.9
Bpe13g00917 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.9 4.9e-49 191.0
Bpe11g01706 . 18 230 Glutathione S-transferase Gene Family AT2G02380 60.1 3.7e-72 268.1
Bpe13g00917 . 15 223 Glutathione S-transferase Gene Family AT2G02380 53.6 1.0e-61 233.4
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41210 67.2 2.6e-95 345.1
Bpe05g00640 . 1 244 Glutathione S-transferase Gene Family AT5G41240 67.2 4.5e-93 339.0
Bpe04g01862 . 8 223 Glutathione S-transferase Gene Family AT5G02780 63.8 1.8e-77 285.8
Bpe04g01862 . 6 225 Glutathione S-transferase Gene Family AT3G55040 67.0 7.9e-83 303.9
Bpe04g01862 . 2 227 Glutathione S-transferase Gene Family AT5G02790 63.4 2.4e-82 302.0
Bpe15g01095 . 1 211 Glutathione S-transferase Gene Family AT1G19570 66.0 1.7e-82 302.4
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G19570 57.7 9.6e-78 286.6
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G19570 58.9 8.7e-71 263.5
Bpe15g01095 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.0 3.3e-86 314.7
Bpe04g01694 . 1 233 Glutathione S-transferase Gene Family AT1G75270 64.5 3.4e-83 304.7
Bpe02g01375 . 6 213 Glutathione S-transferase Gene Family AT1G75270 58.9 7.9e-72 266.9
Bpe02g01375 . 2 215 Glutathione S-transferase Gene Family AT5G16710 75.7 8.3e-100 360.1
Bpe04g01694 . 3 232 Glutathione S-transferase Gene Family AT5G16710 54.3 2.6e-69 258.8
Bpe15g01095 . 3 210 Glutathione S-transferase Gene Family AT5G16710 56.7 4.4e-69 258.1
Bpe02g00628 . 1 268 Glutathione S-transferase Gene Family AT1G77290 66.5 2.4e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000862 1 6 2 2 2 2 3 2 2 2 1 1 3 3 3 3 1 3 3 2 3 2 3 3 4 2 3 8 7 3 85
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01706 Bpe_Chr11 FPKM 3.726527 4.891772 7.902256 9.365633 18.006014 10.904724 15.775842 6.833192 7.152156 8.751306