Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01720 ATGAAGCGTGTCTTCGAAGAAATCTCCGACGACGAGTGGGATAACCATTCATTTGACTCCTCTCGTATTTTTAAGAAATCGAAGAATCATTCATCAAATCCTCCGCCACCTATAGAATCTTTTGCTTATGGATCTCAGAAGTCTCAGAATTCTGACGATAGTAGCGGCGATTGTGTTATCGTTACCGAAAATTTGAGAAATTGTCGTGAAATTTTGGAGGATGAAGATGTTGAGGTTGGGAAGCCGTCGACGGGACCGGTGAATCGTCGGCGTTTTGTAGTTGACGATGAAGAGAGCGATGAGGAATTTGCACAAGTTTTTGATGTGAAATCGACGAGTGGGGATGAGGATACCGAACTGGGGGAGGGGGCCGATGGTGACGTGATTGGTAAGGCTTTGCATAAATGTTCTAAAATATCTGCTGAGTTGAAGAGAGATCTGTATGGCTCTTCGTTCACGGCATGTGACCGATACGCTGAAGTGGAAACTTCTTCAGTGAGAATTGTTAATCAGGATGATATTGATAAGGTATGTAAGGCAGAAGACTCAGATTTTGAGCCCGTTCTCAAAACATACCAGCTGGTTGGTGTGAACTTTCTTCTGCTTTTATATCGCAAGGGAGTCGGTGGAGCTATTTTGGCAGACGAGATGGGTCTAGGAAAGACAGTTCAGGCTATCACCTACTTATCCCTTCTAAAACACTTGAACAATGATCCGGGACCTCATTTGATTGTATGTCCTGCATCTGTTTTGGAAAACTGGGAAAGAGAGCTGAAAAAGTGGTGTCCGACTTTTTCTGTTCTCCAGTATCATGGGGCTGGGCGGTCAGCTTATTCAAAGGAATTGATCTCTCTGGGAAAGGCCGGGTTGGCTCTTCCATTTAATGTTCTTCTTGTGTGTTACTCGCTCTTTGAAAGGCACAGTGCGCAGCAGAAAGATGACCGTAGAGCTTTGAAACGATGGAGATGGAGTTGTGTTCTTATGGATGAGGCACATGCCTTGAAAGACAAAAACAGCTATCGGTGGAAGAATCTTATGTCTGTTGCACGTAATGCAAATCAACGGTTAATGCTGACCGGGACACCACTGCAAAATGATTTGCATGAACTGTGGTCGTTATTGGAGTTTATGATGCCTGATCTTTTTGCTACTCAAGACGTCGACTTAAAAAAGCTATTGAACGCCGAGGATACAGATTTGATCACTCGGATGAAATCTATTTTGGGTCCTTTTATTTTGAGGCGATTAAAATCTGATGTGATGCAGCAACTTGTTCCAAAAATACAACAGGTTGAGTATGTTGTAATGGAAAGGCAACAGGCAGAGGCCTATAGAGAAGCCATTGAGGAGTATCGCACAGCTTCACATGCTCGTGCAGTAAAAGATTCAAAGAATAATTTGAATGCTTTATTTGGAGTTCTTCCACGGCGTCAGATATCTAATTATTTTGTTCAGTTTCGTAAGATTGCAAATCATCCTTTACTGGTCAGGCGCATCTATAATGATGATGATGTTGCTCGTTTTGCTAAAAGATTGCATCCAATGGGCGCATTTGGATTTGAATGTACCTTGGAAAGAGTAGTAGAGGAACTCAAAGGTTACAGTGACTTTGCTATCCACCAGGTTTTGGTTTCTCATGGCATCTCTGATAAAAAAGGAATTCTTGCTAACAAAGAAGTTATGCTTTCCGCAAAGTGCCAGGCATCTCAACTTCTTCCTTCGTTAAAAGAAGCTGGACATCGGGTCTTGATTTTTAGCCAATGGACATCGATGCTCAATATCTTGGAGTGGATCTTGGATGTACTTGGGTTAATTTATACACGACTTGATGGAAGCACTCAGGTGGCAGAGAGACAGAGGATTGTAGACACATTTAATAATGACACTTCGATATTTGCTTGCTTGTTGTCCACAAGAGCTGGGGGCCAGGGTTTAAACTTGACTGGAGCTGATACTGTTGTTATTCACGACATGGATTTTAATCCACAGATTGATCGACAAGCAGAAGATCGCTGTCATCGTATAGGCCAAACAAAACCAGTCACAGTTTACAGGTTGGTCACGAAAGGTACAGTAGATGAGAATGTCTACGAGATAGCCAAAAGGAAGCTTTTCCTTGATGCTGCAGTCTTGGAGTCTGGAATAGAGATGGATAATTCAACTGACACGTCTGAGAAGACTATGGGAGAAATATTATCGGCGCTTCTTCTTGGTTAG 2217 42.58 MKRVFEEISDDEWDNHSFDSSRIFKKSKNHSSNPPPPIESFAYGSQKSQNSDDSSGDCVIVTENLRNCREILEDEDVEVGKPSTGPVNRRRFVVDDEESDEEFAQVFDVKSTSGDEDTELGEGADGDVIGKALHKCSKISAELKRDLYGSSFTACDRYAEVETSSVRIVNQDDIDKVCKAEDSDFEPVLKTYQLVGVNFLLLLYRKGVGGAILADEMGLGKTVQAITYLSLLKHLNNDPGPHLIVCPASVLENWERELKKWCPTFSVLQYHGAGRSAYSKELISLGKAGLALPFNVLLVCYSLFERHSAQQKDDRRALKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATQDVDLKKLLNAEDTDLITRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMERQQAEAYREAIEEYRTASHARAVKDSKNNLNALFGVLPRRQISNYFVQFRKIANHPLLVRRIYNDDDVARFAKRLHPMGAFGFECTLERVVEELKGYSDFAIHQVLVSHGISDKKGILANKEVMLSAKCQASQLLPSLKEAGHRVLIFSQWTSMLNILEWILDVLGLIYTRLDGSTQVAERQRIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTVYRLVTKGTVDENVYEIAKRKLFLDAAVLESGIEMDNSTDTSEKTMGEILSALLLG 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13523139 13530301 - Bpe005035.1 Bpe11g01720 111865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01720 738 CDD SF2_C_SNF 559 687 - -
Bpe11g01720 738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 567 729 IPR001650 -
Bpe11g01720 738 PANTHER SNF2/RAD54 HELICASE FAMILY 45 736 - -
Bpe11g01720 738 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 45 736 - -
Bpe11g01720 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 415 IPR027417 -
Bpe11g01720 738 MobiDBLite consensus disorder prediction 24 56 - -
Bpe11g01720 738 MobiDBLite consensus disorder prediction 27 56 - -
Bpe11g01720 738 Pfam Helicase conserved C-terminal domain 570 676 IPR001650 -
Bpe11g01720 738 Gene3D - 160 440 IPR038718 -
Bpe11g01720 738 Gene3D - 552 734 IPR027417 -
Bpe11g01720 738 SMART helicmild6 593 676 IPR001650 -
Bpe11g01720 738 SMART ultradead3 185 390 IPR014001 -
Bpe11g01720 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 719 IPR027417 -
Bpe11g01720 738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 380 IPR014001 -
Bpe11g01720 738 CDD DEXHc_Snf 189 382 - -
Bpe11g01720 738 Pfam SNF2-related domain 208 495 IPR000330 GO:0005524|GO:0140658
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01720 K14439 SMARCAD1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-] - jre:109006389 1134.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01720 Bpe-Chr11:13523139 Bpe14g01173 Bpe-Chr14:8776575 5.30E-87 dispersed
Bpe11g01720 Bpe-Chr11:13523139 Bpe08g00285 Bpe-Chr8:1715892 2.80E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1106 . . . . . . . . . . . . Car04g00912 . . . . . . . . . . . . . . . . . . Cone13ag0678 Cone19ag0668 . . . . . . . . . . Bpe11g01720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010131 0 0 1 0 1 1 2 1 2 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 1 0 3 2 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22146 PF00176 SNF2_N 2.10E-54 CL0023 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01720 Bpe_Chr11 FPKM 70.256592 74.622543 0.032013 0.030292 0.0 0.0 0.147966 0.024794 0.042025 0.022138