Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01724 ATGGCTGAAGAATGCATTGATATTTGCTCTGTTGGGGCAGCGTCTTCTACGCCAGCAGCCTGGTGGGATGTTCATCCAGACTCTGTCAGTTCTTGGAGTAATACAAACCCTTCTTGTTGGAACCAGAAAAACCCTAATTCTAACTCTTCGTGCGATGAAGAAGTTTCAATCTCAACCTCAGCCCTTTCTGTTGTTTCCAATGGAGGCCTCATTTCAGATCATGTTTCTGATAATCAGCTTTGGAGCCATGTTTTATTGAGTATTGGAAACAATGGAGAAATTCAAACTAATCAAGAAGTTGGAGGGAATTTCATGAATAGACTATCATCCAAGCTCACTGATTCATCAACGAGTATGATAGAACCAGCCTGCAATTATCTGAAGAAGCTGGAGTGCGGCTGGGAAGAAGACCATTTCTCCAACTCTTCGCCGTCTTTCAACAGCTTCGACGATCAAAAGCAGTCGATCGGATTCGGCGAAAGCATGATCGAAAACGAAAGACTGTTGAAACTTTCAGATTTAGTGAGCAGCTGGTCTATTGCTCTTCCAGACCCAGAAACCACTCGCCATTTTAATAATAATACTAATCAGCCATCGATGAATTCTTACGTAAAGTCTGTCACAGTTCATGATATTAATCAAAGCTTAAGCAACTCCGGCTCCATTGGGACGATTGCGTCGGACTCGGAATCGTTTTCTTGCTATGAATTTGATCATGATATGAAATTAGATCAGAAGGGTCTTCATCAGGAGATTGAAATTCCTGGAGATTTGTTCAGAAGATCATTTAATGGAAGTGGAATGATGGGATATCAAGCTTCCATTAATGGGAGCTCAACTTTAGGTGACGACTGCAAGGATTATCTGGGGAACATCATTCCTCGTACTCCTTCAAGAAATTTGGCTGATTTCATATCCTTCACCAATCGATTCAGAAAGCCATTGATGAATATTCAAGCTCAAAAGCCATCTTCCAAATTCTCCAATTTAAAGAAGCAGAATCTCCAAAATTCTTCCCCGACAATTAGAGTCGGTGGAAGAGAACTTGGAGCTTCAAGTACTGATCGAAGGAAGAAGAAATCTGAAGACCCTTCAGATTCAGCCATGAAAAAACCCAAGCTACAAACTTCTACACCCTCATCTGCTAAGCAACCAAAAGTAAAGATTGGAGAGAAGATCACGACACTTCAGCAAATCGTTTCGCCATTTGGAAAGACTGATACTGCCTCCGTCCTCTCTGAAGCCATTGGATACATCAAGTTTCTTCAAGAACAAGTGCAGTTGCTTAGTAACCCTTACATGAAGACTAGCTTCCACAAGGATCCATGGGGAGGAAGGGAGAGAAGAGAGAAAGGGGAAGTAATGAAGTTAGATTTGAAGAGCAGAGGGCTTTGTTTGGTTCCTATCTCATGCACTCCTCAAGTCTTCCATGAAAACAATGGATCCGACCATTACTGGACACCATACAGAGGCTGCTTCTACAGATAA 1488 42.0 MAEECIDICSVGAASSTPAAWWDVHPDSVSSWSNTNPSCWNQKNPNSNSSCDEEVSISTSALSVVSNGGLISDHVSDNQLWSHVLLSIGNNGEIQTNQEVGGNFMNRLSSKLTDSSTSMIEPACNYLKKLECGWEEDHFSNSSPSFNSFDDQKQSIGFGESMIENERLLKLSDLVSSWSIALPDPETTRHFNNNTNQPSMNSYVKSVTVHDINQSLSNSGSIGTIASDSESFSCYEFDHDMKLDQKGLHQEIEIPGDLFRRSFNGSGMMGYQASINGSSTLGDDCKDYLGNIIPRTPSRNLADFISFTNRFRKPLMNIQAQKPSSKFSNLKKQNLQNSSPTIRVGGRELGASSTDRRKKKSEDPSDSAMKKPKLQTSTPSSAKQPKVKIGEKITTLQQIVSPFGKTDTASVLSEAIGYIKFLQEQVQLLSNPYMKTSFHKDPWGGRERREKGEVMKLDLKSRGLCLVPISCTPQVFHENNGSDHYWTPYRGCFYR 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13561454 13564351 - Bpe005039.1 Bpe11g01724 111869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01724 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 422 IPR011598 GO:0046983
Bpe11g01724 495 MobiDBLite consensus disorder prediction 350 369 - -
Bpe11g01724 495 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 481 - -
Bpe11g01724 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 388 440 IPR036638 GO:0046983
Bpe11g01724 495 MobiDBLite consensus disorder prediction 322 387 - -
Bpe11g01724 495 CDD bHLH_AtbHLH_like 379 430 IPR045239 -
Bpe11g01724 495 Gene3D - 381 440 IPR036638 GO:0046983
Bpe11g01724 495 MobiDBLite consensus disorder prediction 322 343 - -
Bpe11g01724 495 MobiDBLite consensus disorder prediction 370 384 - -
Bpe11g01724 495 PANTHER TRANSCRIPTION FACTOR BHLH111 33 481 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01724 - - - qlo:115982290 450.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00813 Bpe-Chr3:28109988 Bpe11g01724 Bpe-Chr11:13561454 1.59E-30 dispersed
Bpe09g00206 Bpe-Chr9:1460776 Bpe11g01724 Bpe-Chr11:13561454 5.38E-30 dispersed
Bpe11g01724 Bpe-Chr11:13561454 Bpe14g00789 Bpe-Chr14:5980428 1.00E-25 dispersed
Bpe11g01724 Bpe-Chr11:13561454 Bpe01g00376 Bpe-Chr1:2365323 5.66E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1105 . . . . . . . . Cmo04g01049 . Cma04g00972 . Car04g00914 . . . . . . . . . . . . . . . . . . . . . . . . Chy10g00019 Cme10g01341 . . . . Bpe11g01724 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00946 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012297 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01724 Bpe_Chr11 FPKM 9.404939 11.897146 11.528494 12.140745 14.506293 14.179346 15.585151 15.754912 14.667469 16.09186