Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01725 ATGGAGGGAGTGTCGTCGACGACCGACCAGCAGAGACTGGTGTCGTCTTTTCTTGAGATCGCTGTCGGCCAAACTGCCGAGACAGCTAGGCAGTTCTTGCAGGCTACAAGTTGGAAACTTGAAGATGCTATTCAGCTGTTCTACGTTGAGAATGAAGGTGGAGCAGTTATGCCAGCATCAGATTCTACAACAAGGGAGAATTCTGGTGCATGGGTCAATCCGAACACAAGTCAATCAGAAAATTACGATGGTGCTGAACCAGTTGGAGAAATCAATGGAGATGAAGTACGTGCTCCATTACCTGTTATAAGAGAAGCCCTGTATGATGATGGAATGCTGTTTGGGTTTTCAAGAATGCGATATCCACCGAATGAATCAAGTACTTCAATTGCTTTCCGTAATTTTCAAGAAGAAATGAAACGCCCTGGTGTGTGGGAACCAGAACATGGTGCTGCATCTACAACAGATAATGCTCGAGATAATCTTGCTTCTCTGTATAGTCCTCCTTTTCATCTTATGTTCAATGGACCCTTTGACAAGGCAAAAAGTGCTGCATCAGTCCAAGACAGATGGCTGCTCGTAAACTTGCAATCAACCAAAGAGTTTAGCTCACACATGCTTAATCGAGATACATGGGCAAATGAGGCTGTTTCTCAAACCATTAGCAGCAATTTTATTTTTTGGCAGGTATATGATGATACAACTGAAGGTCAAAAGGTTTGCACCTATTACAAACTGGACTCTATTCCTGTGGTGCTTGTCATCGATCCTATTACAGGACTGAAAATGCGGTTGTGGTTGGGAATGATTCAACCTGACCGGTTACTTGAGGACATCCTACCATTCATGGATGGAGGACCAAGGAATCATCATATTAATCTGTCTCATAAACGTCCAAGAGCGAGTCCAACCAAACGTAAAATTATTGAAATTGACGAGGAAGATGAGGAAGTTCAAAAGGCATTGGCAGCTTCTCTGGGAAGTTTGGAGGACTCCATTACCGAGACTTCAATTGATAACAAAATTATACCCACCGACAAGGAGGATGAAAAATCGCCCATCCCAAAATCAACCTATCCACCGCTGCCTGAAGAGCCAACTGGTGACAAGTCTCTACTTTGTCGGGTTGGAATTCGTCTTCCTAATGGCCGTAGGGTCCAGCGAAATTTTCTAAAAACTGATTCAGTTCAGCTGCTGTGGTCATTCTGTTCAGCACAACTAGGGGAAAATGCCATGAAACCGTTTCGATTAGCGCATGCATTTCCGGGATCATCAAAGTCTCTGGATTATGATGCCCAATTAACCTTCGGAGAATCAGGGCTTGCCAATTCTATGATCTCAGTTACTTTGGAGTGA 1356 43.81 MEGVSSTTDQQRLVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVENEGGAVMPASDSTTRENSGAWVNPNTSQSENYDGAEPVGEINGDEVRAPLPVIREALYDDGMLFGFSRMRYPPNESSTSIAFRNFQEEMKRPGVWEPEHGAASTTDNARDNLASLYSPPFHLMFNGPFDKAKSAASVQDRWLLVNLQSTKEFSSHMLNRDTWANEAVSQTISSNFIFWQVYDDTTEGQKVCTYYKLDSIPVVLVIDPITGLKMRLWLGMIQPDRLLEDILPFMDGGPRNHHINLSHKRPRASPTKRKIIEIDEEDEEVQKALAASLGSLEDSITETSIDNKIIPTDKEDEKSPIPKSTYPPLPEEPTGDKSLLCRVGIRLPNGRRVQRNFLKTDSVQLLWSFCSAQLGENAMKPFRLAHAFPGSSKSLDYDAQLTFGESGLANSMISVTLE 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13589513 13597677 + Bpe005040.1 Bpe11g01725 111870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01725 451 PANTHER FAS-ASSOCIATED PROTEIN 4 451 - -
Bpe11g01725 451 PANTHER UBX DOMAIN-CONTAINING PROTEIN 4 451 - -
Bpe11g01725 451 MobiDBLite consensus disorder prediction 345 366 - -
Bpe11g01725 451 CDD UBX 375 449 - -
Bpe11g01725 451 Gene3D - 365 450 - -
Bpe11g01725 451 ProSiteProfiles UBX domain profile. 369 449 IPR001012 GO:0005515
Bpe11g01725 451 PIRSF UCP037991_UBX_2_7 1 451 IPR017346 -
Bpe11g01725 451 Pfam UBA-like domain 12 52 - -
Bpe11g01725 451 SMART 45neu3 161 284 IPR006577 -
Bpe11g01725 451 MobiDBLite consensus disorder prediction 59 83 - -
Bpe11g01725 451 Gene3D Glutaredoxin 175 286 - -
Bpe11g01725 451 Pfam UBX domain 374 424 IPR001012 GO:0005515
Bpe11g01725 451 SUPERFAMILY Thioredoxin-like 156 286 IPR036249 -
Bpe11g01725 451 CDD UAS 173 285 - -
Bpe11g01725 451 Gene3D - 7 51 - -
Bpe11g01725 451 CDD UBA_TAP-C_like 17 48 - -
Bpe11g01725 451 SUPERFAMILY Ubiquitin-like 360 449 IPR029071 -
Bpe11g01725 451 MobiDBLite consensus disorder prediction 59 91 - -
Bpe11g01725 451 SUPERFAMILY UBA-like 8 48 IPR009060 GO:0005515
Bpe11g01725 451 Pfam Thioredoxin-like 178 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01725 K24350 UBXN7; UBX domain-containing protein 7 - tcc:18609932 622.468
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01725 Bpe-Chr11:13589513 Bpe15g00644 Bpe-Chr15:17221180 1.37E-09 dispersed
Bpe11g01725 Bpe-Chr11:13589513 Bpe05g00630 Bpe-Chr5:20190697 2.64E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1103 . . . . . . Bma14g01735 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g01725 . . . . . . . . . . . . . . . . . . . Cla11g01360 Cam11g1416 Cec11g1445 Cco11g1441 Clacu11g1575 . Cre11g1816 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007011 1 2 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 2 1 1 1 1 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01725 Bpe_Chr11 FPKM 0.427848 0.0 31.695007 32.352337 96.842834 98.160942 85.837326 19.584183 23.84584 22.410419