Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01736 ATGTCCATATTGTGCTCTTCCGATTGCTTCTCCGACCTTTTGTGCGATGAGGATTCATCCGGATTCTTGTCCAGAGATTCACTGAAATGCTCGTCGGAAATCGAGTGTGCTTCGGACGTTGAGGAGTCAATCGCTGCTTGTATCAAAGAGGAGAGGCAATTCGTGCCTGGTTTCGACTACTTCTCTCGATTTCAGACGAGTTCTCTGGACGCATCTGCCAGAGCGGATTCTGTTGCATGGATTCTCCTGGTTCAAGCCTACTATGGTTTCCATCCATTGACGGCGTATCTGGCTGTTAACTACTTGGATCGGTTCATCTATTCGCATCGTTTGCCGCAAGCAAATGGGTGGCCTTTTCAACTTTTATCTGTTGCTTGCTTGTCACTAGCAGCTAAAATGGAGGAGCCTTTGGCTCCTTGTTTATTGGACCTTCAGGTTGACGGAGCCAAATATTTATTTGAACCCAAAACAATATGTATGGTGGAGCTTCTTGTGCTGAGAGTCCTAGATTGGCGGTTGAGATCCATAACGCCATACAATTTTATTGAATTCTTCGCGTTCAAGGTTGATCCTACAGGAACTTTCATCAGGTTTCTAATCTCAAGAGCCTCTGATATTATCTTATCCAGTATCGAAGAAACTAGTTTCCTGGAATACCGACCATCATGCATAGCTGCCACAGCTTTACTTTGTGCAACAAATGAAATCCCAAGTTTACCTCTAGTTAATCCGGAAGATGCTGAATTATGGTGCAATGGATTAAGCAAAGAAAGACTCATCAAATGCTATCAGTTAACGCAAAAATTGGCGCTTCATGGTAGCCTTAAGAAGCCCCCTAAAATCTTACCGCAGCTCGGAGTTACACTTCAGGCTGAAATGAGGCTGATTGACTCATCTCCTCTCCCCTTCTCGTCCTCATCCATGTCTCATAAGAGGAGAAAATTAAGTACCTGCTTGTGGGTAGTTAACGACAAAGGAAACTCGGAGTGA 990 44.34 MSILCSSDCFSDLLCDEDSSGFLSRDSLKCSSEIECASDVEESIAACIKEERQFVPGFDYFSRFQTSSLDASARADSVAWILLVQAYYGFHPLTAYLAVNYLDRFIYSHRLPQANGWPFQLLSVACLSLAAKMEEPLAPCLLDLQVDGAKYLFEPKTICMVELLVLRVLDWRLRSITPYNFIEFFAFKVDPTGTFIRFLISRASDIILSSIEETSFLEYRPSCIAATALLCATNEIPSLPLVNPEDAELWCNGLSKERLIKCYQLTQKLALHGSLKKPPKILPQLGVTLQAEMRLIDSSPLPFSSSSMSHKRRKLSTCLWVVNDKGNSE 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13729051 13731247 - Bpe005052.2 Bpe11g01736 111881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01736 329 SMART cyclin_7 79 167 IPR013763 -
Bpe11g01736 329 Gene3D - 57 174 - -
Bpe11g01736 329 SMART Cyclin_C_2 176 284 IPR004367 -
Bpe11g01736 329 CDD CYCLIN 74 146 IPR013763 -
Bpe11g01736 329 Pfam Cyclin, N-terminal domain 45 173 IPR006671 -
Bpe11g01736 329 Gene3D - 46 237 - -
Bpe11g01736 329 Pfam Cyclin, C-terminal domain 176 271 IPR004367 -
Bpe11g01736 329 ProSitePatterns Cyclins signature. 74 105 IPR006671 -
Bpe11g01736 329 PANTHER CYCLIN-D1-1 5 318 - -
Bpe11g01736 329 SUPERFAMILY Cyclin-like 161 271 IPR036915 -
Bpe11g01736 329 PANTHER CYCLINS 5 318 IPR039361 -
Bpe11g01736 329 SUPERFAMILY Cyclin-like 34 173 IPR036915 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01736 K18810 CYCD1_2_4; cyclin D1/2/4, plant - vvi:100255261 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00467 Bpe-Chr5:18996730 Bpe11g01736 Bpe-Chr11:13729051 1.49E-57 dispersed
Bpe07g00284 Bpe-Chr7:2041057 Bpe11g01736 Bpe-Chr11:13729051 2.16E-58 dispersed
Bpe11g01736 Bpe-Chr11:13729051 Bpe13g01449 Bpe-Chr13:19750201 7.09E-126 dispersed
Bpe10g00825 Bpe-Chr10:14275298 Bpe11g01736 Bpe-Chr11:13729051 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01919 . 1 291 Core Cell Cycle Gene Families AT3G48750 86.3 2.4e-148 521.5
Bpe15g01030 . 1 237 Core Cell Cycle Gene Families AT3G48750 81.9 5.9e-118 420.6
Bpe07g00306 . 1 300 Core Cell Cycle Gene Families AT3G48750 58.3 6.3e-96 347.4
Bpe02g00294 . 11 307 Core Cell Cycle Gene Families AT3G48750 51.7 2.7e-91 332.0
Bpe07g00306 . 1 305 Core Cell Cycle Gene Families AT3G54180 83.2 8.0e-150 526.6
Bpe02g00294 . 11 310 Core Cell Cycle Gene Families AT3G54180 65.8 8.9e-117 416.8
Bpe04g01919 . 1 284 Core Cell Cycle Gene Families AT3G54180 54.8 3.5e-89 325.1
Bpe15g01030 . 15 233 Core Cell Cycle Gene Families AT3G54180 56.1 1.9e-71 266.2
Bpe07g00306 . 1 305 Core Cell Cycle Gene Families AT2G38620 68.9 1.3e-118 422.5
Bpe02g00294 . 11 310 Core Cell Cycle Gene Families AT2G38620 57.3 7.2e-93 337.0
Bpe15g01030 . 47 233 Core Cell Cycle Gene Families AT2G38620 57.2 2.3e-67 252.3
Bpe02g00294 . 1 307 Core Cell Cycle Gene Families AT1G76540 83.1 1.2e-153 539.3
Bpe07g00306 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.3 2.4e-117 418.7
Bpe04g01919 . 1 286 Core Cell Cycle Gene Families AT1G76540 52.7 8.5e-91 330.5
Bpe15g01030 . 5 233 Core Cell Cycle Gene Families AT1G76540 51.7 1.2e-71 266.9
Bpe02g00294 . 1 312 Core Cell Cycle Gene Families AT1G20930 81.9 1.1e-154 542.7
Bpe07g00306 . 1 305 Core Cell Cycle Gene Families AT1G20930 66.3 8.8e-120 426.8
Bpe04g01919 . 1 286 Core Cell Cycle Gene Families AT1G20930 54.1 1.1e-93 340.1
Bpe15g01030 . 5 233 Core Cell Cycle Gene Families AT1G20930 53.4 1.1e-74 276.9
Bpe08g01024 CCT,ECH 123 439 Core Cell Cycle Gene Families AT5G10270 55.6 1.6e-99 360.1
Bpe11g00484 CCT,ECH 123 439 Core Cell Cycle Gene Families AT5G10270 55.0 2.3e-98 356.3
Bpe02g00272 . 150 468 Core Cell Cycle Gene Families AT5G10270 53.0 2.3e-98 356.3
Bpe13g00648 CCT 99 415 Core Cell Cycle Gene Families AT5G10270 53.2 4.4e-97 352.1
Bpe05g00263 . 115 430 Core Cell Cycle Gene Families AT5G10270 52.9 3.7e-96 349.0
Bpe13g00189 . 92 418 Core Cell Cycle Gene Families AT5G10270 51.4 4.9e-96 348.6
Bpe14g01150 CCT 99 415 Core Cell Cycle Gene Families AT5G10270 53.5 6.3e-96 348.2
Bpe14g00649 . 141 457 Core Cell Cycle Gene Families AT5G10270 53.2 1.1e-95 347.4
Bpe15g00594 CCT 116 432 Core Cell Cycle Gene Families AT5G10270 53.2 4.1e-95 345.5
Bpe13g00301 . 116 433 Core Cell Cycle Gene Families AT5G10270 52.4 3.8e-93 339.0
Bpe08g01024 CCT,ECH 177 439 Core Cell Cycle Gene Families AT5G64960 55.4 2.5e-83 306.2
Bpe11g00484 CCT,ECH 177 439 Core Cell Cycle Gene Families AT5G64960 55.0 1.6e-82 303.5
Bpe02g00272 . 204 468 Core Cell Cycle Gene Families AT5G64960 53.2 2.1e-82 303.1
Bpe14g00649 . 195 457 Core Cell Cycle Gene Families AT5G64960 53.6 5.3e-81 298.5
Bpe13g00648 CCT 153 415 Core Cell Cycle Gene Families AT5G64960 52.5 1.7e-79 293.5
Bpe13g00189 . 146 408 Core Cell Cycle Gene Families AT5G64960 51.8 2.9e-79 292.7
Bpe15g00594 CCT 170 434 Core Cell Cycle Gene Families AT5G64960 52.1 6.4e-79 291.6
Bpe05g00263 . 166 430 Core Cell Cycle Gene Families AT5G64960 51.8 1.4e-78 290.4
Bpe14g01150 CCT 153 415 Core Cell Cycle Gene Families AT5G64960 52.2 9.3e-78 287.7
Bpe13g00301 . 170 435 Core Cell Cycle Gene Families AT5G64960 51.2 4.6e-77 285.4
Bpe10g00280 . 212 617 Core Cell Cycle Gene Families AT5G63610 73.3 8.6e-164 573.5
Bpe01g00538 . 1 473 Core Cell Cycle Gene Families AT4G28980 58.7 7.0e-161 563.9
Bpe14g00392 . 4 474 Core Cell Cycle Gene Families AT1G44110 60.5 2.4e-142 502.3
Bpe02g01650 BCT,CCT 4 478 Core Cell Cycle Gene Families AT1G44110 54.9 7.7e-133 470.7
Bpe04g00043 CCT 214 480 Core Cell Cycle Gene Families AT1G44110 55.8 1.9e-86 316.6
Bpe02g00582 CCT 205 467 Core Cell Cycle Gene Families AT1G44110 54.4 2.1e-82 303.1
Bpe14g00391 BCT,CCT 212 494 Core Cell Cycle Gene Families AT1G77390 58.3 8.3e-92 334.3
Bpe04g00043 CCT 214 480 Core Cell Cycle Gene Families AT1G77390 51.7 1.1e-75 280.8
Bpe02g00582 CCT 205 467 Core Cell Cycle Gene Families AT1G77390 52.5 5.4e-75 278.5
Bpe04g00165 BCT,CCT,ECH 91 229 Core Cell Cycle Gene Families AT1G77390 51.8 2.6e-37 153.3
Bpe04g00043 CCT 1 492 Core Cell Cycle Gene Families AT5G25380 53.2 5.0e-121 431.4
Bpe02g00582 CCT 9 467 Core Cell Cycle Gene Families AT5G25380 52.4 8.0e-111 397.5
Bpe14g00392 . 206 465 Core Cell Cycle Gene Families AT5G25380 52.0 9.2e-75 277.7
Bpe02g01650 BCT,CCT 213 468 Core Cell Cycle Gene Families AT5G25380 50.5 8.1e-71 264.6
Bpe14g00391 BCT,CCT 212 429 Core Cell Cycle Gene Families AT5G11300 55.0 1.8e-64 243.4
Bpe14g00392 . 208 413 Core Cell Cycle Gene Families AT5G11300 55.3 3.8e-62 235.7
Bpe02g01650 BCT,CCT 215 416 Core Cell Cycle Gene Families AT5G11300 54.3 9.2e-61 231.1
Bpe02g00444 BCT,CCT,ECH 86 289 Core Cell Cycle Gene Families AT5G11300 54.0 5.1e-59 225.3
Bpe05g00036 CCT,ECH 85 301 Core Cell Cycle Gene Families AT5G11300 52.1 9.9e-55 211.1
Bpe04g00165 BCT,CCT,ECH 93 226 Core Cell Cycle Gene Families AT5G11300 57.5 6.4e-38 155.2
Bpe06g00715 . 170 501 Core Cell Cycle Gene Families AT1G15570 61.8 1.5e-112 403.3
Bpe02g00582 CCT 206 467 Core Cell Cycle Gene Families AT1G15570 62.2 4.5e-93 338.6
Bpe02g00444 BCT,CCT,ECH 86 344 Core Cell Cycle Gene Families AT1G15570 53.3 1.2e-74 277.3
Bpe14g00392 . 206 472 Core Cell Cycle Gene Families AT1G15570 51.8 2.1e-74 276.6
Bpe02g01650 BCT,CCT 213 475 Core Cell Cycle Gene Families AT1G15570 50.4 1.8e-73 273.5
Bpe14g00392 . 206 472 Core Cell Cycle Gene Families AT1G80370 52.1 9.6e-75 277.7
Bpe02g01650 BCT,CCT 213 476 Core Cell Cycle Gene Families AT1G80370 50.9 9.0e-73 271.2
Bpe02g00444 BCT,CCT,ECH 86 352 Core Cell Cycle Gene Families AT1G80370 52.2 1.2e-72 270.8
Bpe04g00165 BCT,CCT,ECH 93 229 Core Cell Cycle Gene Families AT1G80370 56.3 2.7e-37 153.3
Bpe02g00444 BCT,CCT,ECH 3 356 Core Cell Cycle Gene Families AT5G43080 58.4 2.2e-111 399.1
Bpe05g00036 CCT,ECH 5 366 Core Cell Cycle Gene Families AT5G43080 54.5 2.4e-102 369.0
Bpe04g00043 CCT 216 480 Core Cell Cycle Gene Families AT5G43080 53.6 1.1e-78 290.4
Bpe02g01650 BCT,CCT 216 478 Core Cell Cycle Gene Families AT5G43080 50.2 1.1e-75 280.4
Bpe02g00582 CCT 207 467 Core Cell Cycle Gene Families AT5G43080 52.1 2.1e-74 276.2
Bpe02g00444 BCT,CCT,ECH 6 355 Core Cell Cycle Gene Families AT1G47210 56.7 6.1e-112 401.0
Bpe05g00036 CCT,ECH 1 366 Core Cell Cycle Gene Families AT1G47210 53.1 2.8e-101 365.5
Bpe04g00043 CCT 216 492 Core Cell Cycle Gene Families AT1G47210 51.6 3.4e-78 288.9
Bpe02g00582 CCT 207 467 Core Cell Cycle Gene Families AT1G47210 51.3 4.3e-73 271.9
Bpe02g00444 BCT,CCT,ECH 86 355 Core Cell Cycle Gene Families AT1G47220 58.7 1.1e-88 323.6
Bpe05g00036 CCT,ECH 79 366 Core Cell Cycle Gene Families AT1G47220 56.3 1.5e-82 303.1
Bpe02g00582 CCT 207 467 Core Cell Cycle Gene Families AT1G47220 50.6 2.8e-68 255.8
Bpe02g00444 BCT,CCT,ECH 3 359 Core Cell Cycle Gene Families AT1G47230 55.8 5.3e-108 387.9
Bpe05g00036 CCT,ECH 1 366 Core Cell Cycle Gene Families AT1G47230 55.6 7.2e-105 377.5
Bpe02g00582 CCT 208 467 Core Cell Cycle Gene Families AT1G47230 51.3 1.8e-71 266.5
Bpe02g00023 BCT,CCT 28 450 Core Cell Cycle Gene Families AT4G37490 52.5 5.2e-107 384.8
Bpe04g00534 BCT 1 249 Core Cell Cycle Gene Families AT4G37490 60.2 1.1e-77 287.3
Bpe02g00023 BCT,CCT 13 341 Core Cell Cycle Gene Families AT5G06150 51.5 3.5e-74 275.4
Bpe01g00337 . 674 862 Core Cell Cycle Gene Families AT5G06150 63.0 3.5e-58 222.2
Bpe04g00534 BCT 1 140 Core Cell Cycle Gene Families AT5G06150 65.7 1.3e-44 177.2
Bpe02g00023 BCT,CCT 32 401 Core Cell Cycle Gene Families AT3G11520 53.1 3.1e-95 345.5
Bpe04g00534 BCT 1 207 Core Cell Cycle Gene Families AT3G11520 64.7 4.1e-71 265.4
Bpe02g00310 . 63 287 Core Cell Cycle Gene Families AT3G11520 52.2 3.9e-61 232.3
Bpe01g00337 . 584 977 Core Cell Cycle Gene Families AT2G26760 50.4 9.2e-95 344.0
Bpe04g00534 BCT 1 243 Core Cell Cycle Gene Families AT2G26760 58.8 3.5e-78 288.9
Bpe02g00310 . 18 332 Core Cell Cycle Gene Families AT2G17620 60.7 1.6e-103 373.2
Bpe02g00310 . 9 287 Core Cell Cycle Gene Families AT4G35620 59.3 4.2e-84 308.5
Bpe01g00337 . 696 923 Core Cell Cycle Gene Families AT4G35620 50.7 8.6e-53 204.5
Bpe02g00310 . 13 330 Core Cell Cycle Gene Families AT1G20610 69.6 8.8e-123 437.2
Bpe02g00310 . 13 227 Core Cell Cycle Gene Families AT1G76310 69.4 4.7e-79 291.6
Bpe02g00023 BCT,CCT 176 336 Core Cell Cycle Gene Families AT1G76310 52.1 4.3e-40 162.2
Bpe01g00337 . 697 862 Core Cell Cycle Gene Families AT1G76310 50.6 9.7e-40 161.0
Bpe15g00922 CCT 416 719 Core Cell Cycle Gene Families AT1G16330 67.1 1.0e-114 411.0
Bpe10g00825 . 13 339 Core Cell Cycle Gene Families AT1G70210 58.4 1.2e-98 356.7
Bpe11g01736 . 1 328 Core Cell Cycle Gene Families AT1G70210 57.9 1.9e-96 349.4
Bpe13g00484 . 10 341 Core Cell Cycle Gene Families AT1G70210 56.5 1.1e-86 317.0
Bpe13g01449 . 12 286 Core Cell Cycle Gene Families AT1G70210 61.3 1.2e-85 313.5
Bpe15g00126 . 6 323 Core Cell Cycle Gene Families AT4G34160 50.2 7.3e-81 297.7
Bpe15g00257 . 6 226 Core Cell Cycle Gene Families AT5G65420 59.6 1.9e-70 262.7
Bpe06g00097 . 62 276 Core Cell Cycle Gene Families AT5G65420 56.4 3.8e-63 238.4
Bpe14g00477 CCT 62 266 Core Cell Cycle Gene Families AT5G65420 53.1 2.0e-56 216.1
Bpe15g00257 . 1 195 Core Cell Cycle Gene Families AT5G10440 56.3 5.5e-60 227.6
Bpe06g00097 . 62 241 Core Cell Cycle Gene Families AT5G10440 54.1 1.1e-52 203.4
Bpe14g00477 CCT 59 211 Core Cell Cycle Gene Families AT5G10440 56.2 5.0e-45 177.9
Bpe08g00184 CCT 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 4.1e-43 170.2
Bpe08g01297 CCT 1 82 Core Cell Cycle Gene Families AT2G27960 93.9 2.0e-42 167.9
Bpe08g00184 CCT 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 1.1e-40 162.2
Bpe08g01297 CCT 1 85 Core Cell Cycle Gene Families AT2G27970 89.4 3.1e-40 160.6
Bpe04g01955 . 24 1024 Core Cell Cycle Gene Families AT3G12280 70.4 0.0e+00 1336.6
Bpe06g00511 . 2 492 Core Cell Cycle Gene Families AT1G02970 57.0 1.9e-153 539.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001224 3 2 3 3 4 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 1 4 4 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01736 Bpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.945395 0.832328 0.689138 0.0 0.0 0.0