Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01737 ATGAAAGACCAAATATTGCAGCTGGCAAGTGATCCCACTACAGTAAACTGGATGAAGAAGATAAGGAGAGAGATCCATCAAAACCCAGAACTGGCATACGAAGAATATGAAACAAGTGCTATCATTAGGCGCGAGCTTGATCAGCTCGGCGTTCCATACAGATGGCCAGTGGCTCGAACCGGTGTGGTAGCCATGGTTGGCTCTGGTTCAGCTCCCTTCGTTGCTTTAAGAGCAGATATGGATGCTTTGCCTATTCAGGAAATGGCGGAATGGGAGCACAAGAGCAAAGTGAAGGGAAAAATGCATGCATGTGGGCATGATGCTCATGTCACCATGCTTCTTGGAGCTGCAAAAATACTAAATGAATTCAAATACAAATTACAGGGCACTGTCGTTCTTATATTTCAGCCGGCCGAGGAACTGGGAGAAGGTGCAAAGGACATGATTAAAGAAGGAGTGCTCGTTAATGTGGAGGCCATTTTCGGTTTGCACATTGTGGATAAATATCCAATCGGTGTCGTTTCTTCACGTCCGGGGGAATTCCTCGCCGGGTGCGGAAGCTTCAAAGCAAAGATCAACGGAAAGGGCGGTCATGCGGCGATTCCTCACCACTCAATTGATCCGATTTTGGCTGCTTCGAGATCGATTATTAGCCTGCAAAATATTGTATCGAGAGAGATCGATCCTTTAGACTCCCAGGTGGTTTCTGTTGCAACGATACATGCTGGAACAGCACTGAACGTAATTCCGGATTCTTCTACCATAGCAGGTACCTTCAGAGCATTTGGGAAGAGGAGCTTCTATGCACTGAGGGATAGAATAGAAGAGATCATAAAAATGCAGGCGATCGTCCACCGGTGCTCGGTCGAGATTGACTTTTCCGGAAAGGAACACCCCACGATTCCACCCACTATAAACGATAAGAGAATCTACAATCATGCTCGACGCGTTTCAATTGAGATGCTCGGAGAAGAAAACGTGAAATTAGCTCCGAGTTTCATGGGAAGCGAAGATTTCGCCTTCTACTTGGACAAAGTGCCAGGATCGTTCCTTCTTCTCGGCATTAAAAATGACAAGATCGGAGCCATACATCCTCCGCATAGTCCTCACTACTTCATCGACGAGGACGTATTCTCCATCGGAGCGGCATTACACACAGCATTTGCATACTCGTTTCTCTTAGATTCGACAAGGTCAAATTCTTTCTAG 1209 46.4 MKDQILQLASDPTTVNWMKKIRREIHQNPELAYEEYETSAIIRRELDQLGVPYRWPVARTGVVAMVGSGSAPFVALRADMDALPIQEMAEWEHKSKVKGKMHACGHDAHVTMLLGAAKILNEFKYKLQGTVVLIFQPAEELGEGAKDMIKEGVLVNVEAIFGLHIVDKYPIGVVSSRPGEFLAGCGSFKAKINGKGGHAAIPHHSIDPILAASRSIISLQNIVSREIDPLDSQVVSVATIHAGTALNVIPDSSTIAGTFRAFGKRSFYALRDRIEEIIKMQAIVHRCSVEIDFSGKEHPTIPPTINDKRIYNHARRVSIEMLGEENVKLAPSFMGSEDFAFYLDKVPGSFLLLGIKNDKIGAIHPPHSPHYFIDEDVFSIGAALHTAFAYSFLLDSTRSNSF 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13759798 13761930 - Bpe005054.1 Bpe11g01737 111882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01737 402 TIGRFAM amidohydrolases: amidohydrolase 19 381 IPR017439 GO:0016787
Bpe11g01737 402 Pfam Peptidase family M20/M25/M40 75 389 IPR002933 GO:0016787
Bpe11g01737 402 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 399 IPR017439 GO:0016787
Bpe11g01737 402 Pfam Peptidase dimerisation domain 184 280 IPR011650 -
Bpe11g01737 402 CDD M20_IAA_Hyd 18 393 IPR044757 GO:0009850|GO:0016787
Bpe11g01737 402 SUPERFAMILY Zn-dependent exopeptidases 15 395 - -
Bpe11g01737 402 Gene3D - 183 301 - -
Bpe11g01737 402 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 2 1 399 - -
Bpe11g01737 402 PIRSF Amidohydrol_AmhX 3 396 IPR017439 GO:0016787
Bpe11g01737 402 Gene3D Zn peptidases 19 377 - -
Bpe11g01737 402 SUPERFAMILY Bacterial exopeptidase dimerisation domain 183 302 IPR036264 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01737 K14664 ILR1; IAA-amino acid hydrolase [EC:3.5.1.-] - qsu:111993955 648.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01208 Bpe-Chr3:30908726 Bpe11g01737 Bpe-Chr11:13759798 1.62E-153 dispersed
Bpe11g01737 Bpe-Chr11:13759798 Bpe14g00384 Bpe-Chr14:3609020 5.40E-171 dispersed
Bpe11g01737 Bpe-Chr11:13759798 Bpe09g00010 Bpe-Chr9:97945 1.07E-171 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01737 Bpe_Chr11 FPKM 6.823593 5.73552 2.079149 1.751084 7.022631 4.189725 4.464792 7.773993 9.160787 8.219405