Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01738 ATGTCAGAAACCTCGAGGGGCCGAGTCACCGTAACGTTCGGTCGTAGTGGCCAGGTAGTGAAGAGAGCGGGACCTGAGCCAGACCTCTCTTTTGGTCATACTTTTGCTGCTGCTGGGACTAAGCGCTCTATAAGAGATAGACTGGGAAGTAATATGGATAGTTTCCCATCGCATGACAGCCATCTCAACAGAAAACGTCAACGAGGAAGCCTAGGAATGCCAAGTCTGAGTTCTTATAGTTCAGGGGCGACGCACATTGGCAAAGACGACCTTCGCTTTAAACTCTTGCAAAAAGATGCATCTATCAAAGCACAAAGGCGTAATGAGAATCATGTGGATCTTCGAGAGAAGTTGTTGAAGACTTCTCAACAACCTGTTAGTAATTTTGATTCAGGGCGTAGCCTGCCTCAATCACATAACAGTAATATCATTGGGCGGATTCCTTCAACAAGGAGAGTAGATGATTTTCAGAAGATGGACTCATTTAGAAGTTCTTCCTCAACATGGACTTTGGATCATTTGAGACAGAGATCTCCAGGTAGCAGATCTCCAAGTAGAAGATCTCCAGGTAGAAGATCTCCTGGGAGAATTCAAGAAAATTCAAGAGGTTTTTCTCCACAAAGGACTATGGAAGATCTTCGGAGAAATAGGACATTTGATAATGTCATAGTGGACTCATACGGAACCAAAAGAATTCTTGATACTTCAAGGCCTATAGGCTCCTCACCATATATGGCAAATTCTTCCTTGCAGTCAGGATCTACAAAGACCGCGGCTCCTCCAGTTCGGCAACTCCCTCCACCTGGTGGCATTATGGCGAAAAATTCTTACCCAGTTGATGAACCACAAACAATGGATGGATTTCTGCATTCTCTGGGATTGGGGAAATATGTCATCATTTTTAAGGCAGAAGAAGTAGATTTGACAGCCTTAAAGCAGATGGGAGAGAATGATCTTAAAGAAATTGGGATACCCATGGGCCCTAGAAAGAAGATTCTGCTTGCTCTCGCACCTCGTTCCAAGCGGTAA 1029 44.41 MSETSRGRVTVTFGRSGQVVKRAGPEPDLSFGHTFAAAGTKRSIRDRLGSNMDSFPSHDSHLNRKRQRGSLGMPSLSSYSSGATHIGKDDLRFKLLQKDASIKAQRRNENHVDLREKLLKTSQQPVSNFDSGRSLPQSHNSNIIGRIPSTRRVDDFQKMDSFRSSSSTWTLDHLRQRSPGSRSPSRRSPGRRSPGRIQENSRGFSPQRTMEDLRRNRTFDNVIVDSYGTKRILDTSRPIGSSPYMANSSLQSGSTKTAAPPVRQLPPPGGIMAKNSYPVDEPQTMDGFLHSLGLGKYVIIFKAEEVDLTALKQMGENDLKEIGIPMGPRKKILLALAPRSKR 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13766132 13769978 - Bpe005055.1 Bpe11g01738 111883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01738 342 Pfam SAM domain (Sterile alpha motif) 284 336 IPR001660 GO:0005515
Bpe11g01738 342 MobiDBLite consensus disorder prediction 238 262 - -
Bpe11g01738 342 MobiDBLite consensus disorder prediction 122 152 - -
Bpe11g01738 342 ProSiteProfiles SAM domain profile. 280 334 IPR001660 GO:0005515
Bpe11g01738 342 MobiDBLite consensus disorder prediction 122 147 - -
Bpe11g01738 342 SUPERFAMILY SAM/Pointed domain 282 336 IPR013761 -
Bpe11g01738 342 MobiDBLite consensus disorder prediction 165 207 - -
Bpe11g01738 342 MobiDBLite consensus disorder prediction 165 212 - -
Bpe11g01738 342 MobiDBLite consensus disorder prediction 1 83 - -
Bpe11g01738 342 MobiDBLite consensus disorder prediction 240 259 - -
Bpe11g01738 342 Gene3D - 282 342 IPR013761 -
Bpe11g01738 342 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 341 - -
Bpe11g01738 342 SMART SAM_4 277 342 IPR001660 GO:0005515
Bpe11g01738 342 PANTHER OSJNBA0060P14.15 PROTEIN 1 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01738 - - - tcc:18609362 340.887
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01738 Bpe-Chr11:13766132 Bpe14g00204 Bpe-Chr14:2311077 1.16E-19 dispersed
Bpe11g01738 Bpe-Chr11:13766132 Bpe06g00395 Bpe-Chr6:15389249 1.47E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0641 . . . . . . . Bda07g01570 . Bpe11g01738 . . . . Cmo04g02857 . . . . . Cpe13g00922 Cpe07g00639 . . . . . . . . . . . . . . . Csa05g01723 Chy09g00662 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004993 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 5 3 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01738 Bpe_Chr11 FPKM 0.0 1.079651 2.543895 1.700433 1.633266 1.428991 1.794452 54.867863 61.045074 58.055462