Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01741 ATGGCGACAAATGGCGTGGCTTCGTGGACATCTAGGTTGGAAAAGATTGACAGTGGTTGCGGCGGTCTATTTTCGCCTTCTGATTCAGATGAAGTTCACGTTCTCGCCGTTGATGACAGTTTGATCGATCGGACGGTGATCGAGCGCTTGCTCAAAACTTCGTGCTGTAAAGTTACGGCGGTGGATAGCGGGAGGAGAGCTCTGCAATACCTCGGGTTGGACGAGGAAACAAGCTCCTCCGACGAGTACGATGGTGTGAAAGTGGACATGATCATCACTGATTATTGCATGCCCGGGATGACAGGCTTCGAGTTGCTTAAGAAAATTAAGGAATCATCTTCGCGAAGACAGATACCAGTGGTAATTATGTCGTCCGAAAACATATTAGCGCGAGTAGACAGGTGTTTGGAAGAAGGCGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCAGATGTGGAACGGCTCAGGGACAACATGAGGAGAGAGGGCGTCAAGGACCCTATAAATGAGGTTAGCAGTGGGGTCCATAAGAGGAAAGTACGAGACTCTGCAGTCGTGGTTTCATCATCATCACCGTCCATCTCATCGTCCTCGAGATCACCTTCATCTTGTTCATCGTCATCCTCAGTTCCATCTTGTTCACCCACGTCGCTCGATTCGCCGATCCGACGGCTCAAATTGACCACCACAGATTAA 699 49.21 MATNGVASWTSRLEKIDSGCGGLFSPSDSDEVHVLAVDDSLIDRTVIERLLKTSCCKVTAVDSGRRALQYLGLDEETSSSDEYDGVKVDMIITDYCMPGMTGFELLKKIKESSSRRQIPVVIMSSENILARVDRCLEEGAEDFIVKPVKLSDVERLRDNMRREGVKDPINEVSSGVHKRKVRDSAVVVSSSSPSISSSSRSPSSCSSSSSVPSCSPTSLDSPIRRLKLTTTD 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13784786 13785808 + Bpe005058.1 Bpe11g01741 111886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01741 232 MobiDBLite consensus disorder prediction 185 232 - -
Bpe11g01741 232 SUPERFAMILY CheY-like 32 156 IPR011006 -
Bpe11g01741 232 SMART REC_2 32 157 IPR001789 GO:0000160
Bpe11g01741 232 ProSiteProfiles Response regulatory domain profile. 33 161 IPR001789 GO:0000160
Bpe11g01741 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 231 IPR045279 GO:0009736
Bpe11g01741 232 MobiDBLite consensus disorder prediction 171 232 - -
Bpe11g01741 232 Gene3D - 32 196 - -
Bpe11g01741 232 Pfam Response regulator receiver domain 34 153 IPR001789 GO:0000160
Bpe11g01741 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 25 231 - -
Bpe11g01741 232 CDD REC_typeA_ARR 34 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01741 K14492 ARR-A; two-component response regulator ARR-A family - mnt:21410451 267.314
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00821 Bpe11g01741 CCT
Bpe10g00821 Bpe11g01741 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01741 Bpe-Chr11:13784786 Bpe13g00265 Bpe-Chr13:10597931 2.99E-64 dispersed
Bpe10g00821 Bpe-Chr10:14251925 Bpe11g01741 Bpe-Chr11:13784786 7.91E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g794 . . . . . Bpe10g00821 . Bma15g00201 Cmo04g01675 . . . . . Sed06g1597 . Cpe01g01415 Bhi07g01668 Tan04g1168 Cmetu10g0771 . . . . Cla05g02508 Cam05g2692 Cec05g2725 Cco05g2760 Clacu05g2695 Cmu05g2549 Cre05g2664 . . Cone8ag0639 Cone12ag0621 Lsi04g00507 Csa05g02375 Chy10g00941 Cme10g00486 Blo06g00861 . Bda07g01573 . Bpe11g01741 . . . . . . Cma04g01600 . Car04g01645 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe02g01970 . 76 338 Response Regulator Gene Family AT3G16857 50.9 1.2e-67 254.6
Bpe13g01498 . 52 264 Response Regulator Gene Family AT3G16857 51.5 6.7e-55 212.2
Bpe01g00636 BCT,CCT,ECH 17 327 Response Regulator Gene Family AT4G31920 58.1 1.0e-78 291.2
Bpe13g01134 BCT,CCT,ECH 19 277 Response Regulator Gene Family AT4G31920 56.4 3.6e-76 282.7
Bpe02g02148 BCT,CCT,ECH 1 281 Response Regulator Gene Family AT4G31920 51.4 4.7e-76 282.3
Bpe02g01970 . 34 292 Response Regulator Gene Family AT4G31920 54.8 2.4e-72 270.0
Bpe05g00823 BCT,CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 55.8 5.0e-70 262.3
Bpe04g01103 CCT,ECH 25 289 Response Regulator Gene Family AT4G31920 56.3 4.4e-66 249.2
Bpe13g00682 BCT,CCT,ECH 25 299 Response Regulator Gene Family AT4G31920 50.4 1.3e-65 247.7
Bpe13g01498 . 11 256 Response Regulator Gene Family AT4G31920 51.6 8.6e-62 235.0
Bpe02g01970 . 117 285 Response Regulator Gene Family AT1G67710 53.5 1.3e-39 161.0
Bpe13g00682 BCT,CCT,ECH 108 271 Response Regulator Gene Family AT1G67710 51.2 1.8e-38 157.1
Bpe01g00636 BCT,CCT,ECH 15 386 Response Regulator Gene Family AT2G25180 56.1 1.8e-94 343.6
Bpe02g01970 . 36 292 Response Regulator Gene Family AT2G25180 57.6 4.3e-75 279.3
Bpe13g00682 BCT,CCT,ECH 27 298 Response Regulator Gene Family AT2G25180 56.7 6.8e-73 271.9
Bpe13g01498 . 11 256 Response Regulator Gene Family AT2G25180 54.0 1.5e-67 254.2
Bpe02g01970 . 97 341 Response Regulator Gene Family AT2G01760 55.0 2.7e-60 229.2
Bpe08g00654 BCT,CCT,ECH 83 279 Response Regulator Gene Family AT2G01760 55.8 2.2e-46 183.0
Bpe01g00636 BCT,CCT,ECH 78 272 Response Regulator Gene Family AT2G01760 52.3 2.4e-40 162.9
Bpe05g00823 BCT,CCT,ECH 27 271 Response Regulator Gene Family AT5G58080 60.4 4.6e-67 252.7
Bpe13g00682 BCT,CCT,ECH 27 313 Response Regulator Gene Family AT5G58080 52.9 3.0e-66 250.0
Bpe05g00823 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 73.5 8.4e-80 295.0
Bpe13g00682 BCT,CCT,ECH 5 251 Response Regulator Gene Family AT4G16110 68.2 1.2e-78 291.2
Bpe04g01103 CCT,ECH 26 268 Response Regulator Gene Family AT4G16110 68.5 4.3e-76 282.7
Bpe02g01970 . 35 264 Response Regulator Gene Family AT4G16110 58.8 1.1e-66 251.5
Bpe08g00654 BCT,CCT,ECH 12 253 Response Regulator Gene Family AT4G16110 58.2 1.9e-60 230.7
Bpe13g01498 . 10 235 Response Regulator Gene Family AT4G16110 53.0 3.1e-58 223.4
Bpe01g00636 BCT,CCT,ECH 7 248 Response Regulator Gene Family AT4G16110 56.8 1.9e-55 214.2
Bpe13g00265 CCT,ECH 24 148 Response Regulator Gene Family AT3G48100 80.3 4.6e-52 201.1
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT3G48100 76.2 1.9e-50 195.7
Bpe10g00821 CCT,ECH 22 159 Response Regulator Gene Family AT3G48100 71.0 2.8e-49 191.8
Bpe11g01741 CCT,ECH 32 160 Response Regulator Gene Family AT3G48100 71.3 2.4e-48 188.7
Bpe04g01386 CCT 7 154 Response Regulator Gene Family AT3G48100 55.4 1.7e-38 156.0
Bpe04g01964 . 3 153 Response Regulator Gene Family AT3G48100 52.3 1.9e-37 152.5
Bpe10g00821 CCT,ECH 1 164 Response Regulator Gene Family AT1G59940 66.7 5.9e-55 211.5
Bpe11g01741 CCT,ECH 1 163 Response Regulator Gene Family AT1G59940 65.9 5.9e-55 211.5
Bpe13g00265 CCT,ECH 1 150 Response Regulator Gene Family AT1G59940 67.5 1.7e-49 193.4
Bpe15g00623 CCT,ECH 4 139 Response Regulator Gene Family AT1G59940 69.3 2.7e-47 186.0
Bpe04g01386 CCT 12 150 Response Regulator Gene Family AT1G59940 59.0 1.3e-38 157.1
Bpe04g01964 . 8 149 Response Regulator Gene Family AT1G59940 60.6 1.3e-38 157.1
Bpe15g00976 . 10 170 Response Regulator Gene Family AT1G59940 53.7 1.2e-36 150.6
Bpe10g00821 CCT,ECH 19 216 Response Regulator Gene Family AT1G10470 61.1 2.9e-54 208.8
Bpe11g01741 CCT,ECH 19 193 Response Regulator Gene Family AT1G10470 63.6 1.1e-53 206.8
Bpe13g00265 CCT,ECH 15 147 Response Regulator Gene Family AT1G10470 74.6 2.2e-49 192.6
Bpe15g00623 CCT,ECH 4 139 Response Regulator Gene Family AT1G10470 70.8 1.2e-47 186.8
Bpe04g01386 CCT 14 162 Response Regulator Gene Family AT1G10470 59.1 4.5e-39 158.3
Bpe15g00976 . 10 157 Response Regulator Gene Family AT1G10470 56.1 1.2e-36 150.2
Bpe13g00265 CCT,ECH 24 148 Response Regulator Gene Family AT3G48100 80.3 4.6e-52 201.1
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT3G48100 76.2 1.9e-50 195.7
Bpe10g00821 CCT,ECH 22 159 Response Regulator Gene Family AT3G48100 71.0 2.8e-49 191.8
Bpe11g01741 CCT,ECH 32 160 Response Regulator Gene Family AT3G48100 71.3 2.4e-48 188.7
Bpe04g01386 CCT 7 154 Response Regulator Gene Family AT3G48100 55.4 1.7e-38 156.0
Bpe04g01964 . 3 153 Response Regulator Gene Family AT3G48100 52.3 1.9e-37 152.5
Bpe13g00265 CCT,ECH 16 148 Response Regulator Gene Family AT5G62920 80.6 1.1e-53 206.5
Bpe15g00623 CCT,ECH 13 140 Response Regulator Gene Family AT5G62920 79.1 1.0e-51 199.9
Bpe10g00821 CCT,ECH 23 159 Response Regulator Gene Family AT5G62920 72.3 9.0e-48 186.8
Bpe11g01741 CCT,ECH 30 160 Response Regulator Gene Family AT5G62920 71.0 3.4e-47 184.9
Bpe04g01386 CCT 14 150 Response Regulator Gene Family AT5G62920 59.9 5.9e-39 157.5
Bpe04g01964 . 10 152 Response Regulator Gene Family AT5G62920 53.8 1.9e-37 152.5
Bpe13g00265 CCT,ECH 5 151 Response Regulator Gene Family AT1G19050 71.8 3.9e-52 201.4
Bpe15g00623 CCT,ECH 12 140 Response Regulator Gene Family AT1G19050 75.4 1.8e-49 192.6
Bpe10g00821 CCT,ECH 31 204 Response Regulator Gene Family AT1G19050 58.9 3.0e-44 175.3
Bpe11g01741 CCT,ECH 31 191 Response Regulator Gene Family AT1G19050 56.5 2.2e-42 169.1
Bpe04g01386 CCT 5 203 Response Regulator Gene Family AT2G41310 57.1 1.5e-57 219.5
Bpe04g01964 . 1 151 Response Regulator Gene Family AT2G41310 60.8 2.3e-45 179.1
Bpe10g00821 CCT,ECH 26 170 Response Regulator Gene Family AT2G41310 56.6 2.2e-40 162.5
Bpe11g01741 CCT,ECH 33 166 Response Regulator Gene Family AT2G41310 57.4 2.9e-40 162.2
Bpe15g00976 . 3 161 Response Regulator Gene Family AT2G41310 54.7 4.9e-40 161.4
Bpe02g00640 . 16 167 Response Regulator Gene Family AT2G41310 54.2 1.4e-39 159.8
Bpe13g00265 CCT,ECH 19 147 Response Regulator Gene Family AT2G41310 60.1 1.9e-39 159.5
Bpe15g00623 CCT,ECH 8 148 Response Regulator Gene Family AT2G41310 55.3 7.1e-39 157.5
Bpe04g01386 CCT 5 203 Response Regulator Gene Family AT3G57040 58.3 3.3e-63 238.4
Bpe04g01964 . 1 176 Response Regulator Gene Family AT3G57040 54.0 7.9e-49 190.7
Bpe15g00976 . 3 161 Response Regulator Gene Family AT3G57040 57.3 1.1e-42 170.2
Bpe11g01741 CCT,ECH 31 167 Response Regulator Gene Family AT3G57040 57.5 1.9e-42 169.5
Bpe10g00821 CCT,ECH 26 161 Response Regulator Gene Family AT3G57040 59.3 5.5e-42 167.9
Bpe13g00265 CCT,ECH 23 147 Response Regulator Gene Family AT3G57040 61.8 1.0e-40 163.7
Bpe15g00623 CCT,ECH 12 150 Response Regulator Gene Family AT3G57040 57.6 1.3e-40 163.3
Bpe02g00640 . 16 167 Response Regulator Gene Family AT3G57040 54.2 5.1e-40 161.4
Bpe13g00265 CCT,ECH 21 158 Response Regulator Gene Family AT1G74890 72.7 1.5e-51 199.5
Bpe15g00623 CCT,ECH 10 161 Response Regulator Gene Family AT1G74890 66.2 8.2e-50 193.7
Bpe10g00821 CCT,ECH 27 218 Response Regulator Gene Family AT1G74890 55.2 2.5e-46 182.2
Bpe11g01741 CCT,ECH 25 164 Response Regulator Gene Family AT1G74890 65.7 2.7e-45 178.7
Bpe04g01386 CCT 12 150 Response Regulator Gene Family AT1G74890 59.0 3.8e-39 158.3
Bpe04g01964 . 4 154 Response Regulator Gene Family AT1G74890 52.3 1.1e-38 156.8
Bpe11g01741 CCT,ECH 30 157 Response Regulator Gene Family AT2G40670 61.1 3.6e-40 161.4
Bpe10g00821 CCT,ECH 30 161 Response Regulator Gene Family AT2G40670 62.2 6.2e-40 160.6
Bpe04g01386 CCT 1 153 Response Regulator Gene Family AT2G40670 51.8 2.6e-38 155.2
Bpe13g00265 CCT,ECH 23 147 Response Regulator Gene Family AT2G40670 61.8 7.5e-38 153.7
Bpe15g00623 CCT,ECH 12 144 Response Regulator Gene Family AT2G40670 58.3 2.2e-37 152.1
Bpe10g00821 CCT,ECH 22 161 Response Regulator Gene Family AT3G56380 61.0 8.0e-42 166.8
Bpe11g01741 CCT,ECH 16 157 Response Regulator Gene Family AT3G56380 56.4 8.9e-41 163.3
Bpe04g01386 CCT 1 153 Response Regulator Gene Family AT3G56380 54.5 9.8e-40 159.8
Bpe13g00265 CCT,ECH 16 147 Response Regulator Gene Family AT3G56380 59.7 2.9e-39 158.3
Bpe15g00623 CCT,ECH 12 143 Response Regulator Gene Family AT3G56380 58.5 3.2e-38 154.8
Bpe02g01970 . 76 338 Response Regulator Gene Family AT3G16857 50.9 1.2e-67 254.6
Bpe13g01498 . 52 264 Response Regulator Gene Family AT3G16857 51.5 6.7e-55 212.2
Bpe05g00823 BCT,CCT,ECH 26 251 Response Regulator Gene Family AT4G16110 73.5 8.4e-80 295.0
Bpe13g00682 BCT,CCT,ECH 5 251 Response Regulator Gene Family AT4G16110 68.2 1.2e-78 291.2
Bpe04g01103 CCT,ECH 26 268 Response Regulator Gene Family AT4G16110 68.5 4.3e-76 282.7
Bpe02g01970 . 35 264 Response Regulator Gene Family AT4G16110 58.8 1.1e-66 251.5
Bpe08g00654 BCT,CCT,ECH 12 253 Response Regulator Gene Family AT4G16110 58.2 1.9e-60 230.7
Bpe13g01498 . 10 235 Response Regulator Gene Family AT4G16110 53.0 3.1e-58 223.4
Bpe01g00636 BCT,CCT,ECH 7 248 Response Regulator Gene Family AT4G16110 56.8 1.9e-55 214.2
Bpe01g00636 BCT,CCT,ECH 17 327 Response Regulator Gene Family AT4G31920 58.1 1.0e-78 291.2
Bpe13g01134 BCT,CCT,ECH 19 277 Response Regulator Gene Family AT4G31920 56.4 3.6e-76 282.7
Bpe02g02148 BCT,CCT,ECH 1 281 Response Regulator Gene Family AT4G31920 51.4 4.7e-76 282.3
Bpe02g01970 . 34 292 Response Regulator Gene Family AT4G31920 54.8 2.4e-72 270.0
Bpe05g00823 BCT,CCT,ECH 25 272 Response Regulator Gene Family AT4G31920 55.8 5.0e-70 262.3
Bpe04g01103 CCT,ECH 25 289 Response Regulator Gene Family AT4G31920 56.3 4.4e-66 249.2
Bpe13g00682 BCT,CCT,ECH 25 299 Response Regulator Gene Family AT4G31920 50.4 1.3e-65 247.7
Bpe13g01498 . 11 256 Response Regulator Gene Family AT4G31920 51.6 8.6e-62 235.0
Bpe02g01970 . 117 285 Response Regulator Gene Family AT1G67710 53.5 1.3e-39 161.0
Bpe13g00682 BCT,CCT,ECH 108 271 Response Regulator Gene Family AT1G67710 51.2 1.8e-38 157.1
Bpe01g00636 BCT,CCT,ECH 15 386 Response Regulator Gene Family AT2G25180 56.1 1.8e-94 343.6
Bpe02g01970 . 36 292 Response Regulator Gene Family AT2G25180 57.6 4.3e-75 279.3
Bpe13g00682 BCT,CCT,ECH 27 298 Response Regulator Gene Family AT2G25180 56.7 6.8e-73 271.9
Bpe13g01498 . 11 256 Response Regulator Gene Family AT2G25180 54.0 1.5e-67 254.2
Bpe02g01970 . 97 341 Response Regulator Gene Family AT2G01760 55.0 2.7e-60 229.2
Bpe08g00654 BCT,CCT,ECH 83 279 Response Regulator Gene Family AT2G01760 55.8 2.2e-46 183.0
Bpe01g00636 BCT,CCT,ECH 78 272 Response Regulator Gene Family AT2G01760 52.3 2.4e-40 162.9
Bpe05g00823 BCT,CCT,ECH 27 271 Response Regulator Gene Family AT5G58080 60.4 4.6e-67 252.7
Bpe13g00682 BCT,CCT,ECH 27 313 Response Regulator Gene Family AT5G58080 52.9 3.0e-66 250.0
Bpe15g01310 . 20 271 Response Regulator Gene Family AT5G60100 56.6 1.5e-63 240.4
Bpe04g00712 . 65 216 Response Regulator Gene Family AT5G60100 69.1 5.4e-53 205.3
Bpe05g01054 CCT,ECH 21 154 Response Regulator Gene Family AT5G60100 61.9 1.0e-43 174.5
Bpe15g01310 . 65 197 Response Regulator Gene Family AT5G24470 59.4 3.8e-41 166.4
Bpe04g00712 . 74 218 Response Regulator Gene Family AT5G24470 53.8 2.3e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005399 2 2 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22147 PF00072 Response_reg 5.60E-22 CL0304 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01741 Bpe_Chr11 FPKM 35.529411 37.074722 6.518471 6.775624 8.779234 7.699125 7.067373 0.605369 0.375322 0.662129