Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01744 TCCGCCATGGCGGTGATTGTTCAGCGAAGGGGTTCTACCTTTCTCTCTCTGTTCTTAGTTTTCTCTGCCGCCCGTTATCCTCTCTCTCGTTGCCTATCCAATTCCCCTCAAAACATTGAGACATTGTATCCGACTCAAATTTTTTCCAATCCTCCGGCGATTTCTCCTCCTCCACCTCCAACTCCACCTTCGCCGGTAATATCCTCGTCTCCGGAGTCGACCAGGACGAGGACGATCGCGACGGCAGTAGTGGTTACTGCTGCTGGGACGCTTTTGCTTTCTGCGTTGCTTTTCTTTTTGATCCAGAAGTGTTTGAGAAGAAGACAAAAAGGAAGGCGGGCTGGTTCTGGTTCTGGTTCTGGTTCAGAGTCTAGATTTACCGGAGCTCAGAGGCAGCCGGTGATTATGGCGCAGAGTGAGTTTGCTAGATTGAGCGGAAATCTGAAGGGATTTATTGTGGATGAGAATGGATTGGATGTGATCTACTGGAGGAAACTGGAGAGCAAAAGGTCGAACAATCTGAGGAAACTGTCGGTTCCTCATCTCAAAAACAAAGCGAGGGAGGAAGAAGAAGAAGGAAGAAAGGGTGAGAAAATACAAGAACTTCCTCTTCTCAGAGGAAAATCTTCGACTTCGCAAGTGAAATTTTCGCCGGCGACCGAACTTCCAAACCGGAAAAGTCGCCGTACTCTGCCAGCGCCGAAAGCATTGCCTCATCAATCTTCAGGGTCGAAACCCCCACCGCCGCCTGTACTGGGTGGGAAACCGGCTGAAGAATCGTCAAGCTCGAATGCCGATCAGGTCAGATTGAAGCCATTGCATTGGGATAAGGTGAATACCAGAGATAAATCTCATTCAATGGTGTGGGACAGAATCGATGGAGGTTCTTTCAGCTTTGATGGAGATTTAATGGAAGCTTTGTTCGGAACCGTGGCTACGAACAGAAACTCTCCTCAGAAAACGAGGAACTCAGCCGCTCCGATAGGCGGAAACTCCAACGCACCAGCTAAGATCTTCATTCTTGATTCGAAAAAGTCTCAGAACACGGCGATTGTTATCAAATCGATGTCGATTTCTCGCGACGAAATCGTCGACGCTCTAACGGACGGCCATGGCCTCGAATCCGACATCCTGGAAAAGCTGGCCAGAATTGCTCCGAATCAAGAAGAACAATCTCAGATCCTCAATTTCACTGGAGACCCCCTGATATTAGCCGACGCAGAATCGTTCCTCTTCAAGCTTCTGAAAACTATTCCATCTGCTTTTATTCGATTAGATTCTATGCTTTTCCGATCAACTTATGATTCGGAGATTCTCCATCTCAAGGAACATCTACACTCCATTGAAGCAGGCTGCAAAGAGCTTCTAACCCGAGGTCTCTTCATGAAACTACTCGAAGCAGTTCTCAAAGCAGGAAATCGAATGAATGCAGGCACCGCAAGAGGCAACGCTCAAGCATTCAACCTCACCGCTCTTCGGAAACTCTCCGACGTCAAAAGCACCGACGGGAAAACCAATCTACTTCACTTCGTCGTCGAAGAAGTAGTCAGATCGGAGGGAAAGAAATGCGTCTTGAACAAAAACGCGAGCTTCAGCCGAAACAGTAGCATCAGTAGCACTAGCAGCATAAACTCCGATCATTATTCTACGACGAAAGATGAAAGAATGAAGGAATACATGATGTTCGGATTACCAGTCGTCGGAGGCCTCAGTGCCGAGTTCTCCAACGTGAAGAAAGCTGCAACCATTGATTACAACACCCTCGCCGGTATATGCTCCGGCCTCACATCCCGGACGTCGGGAATTCGACAGACTCTTCAGAAATGCGTCAGCGACGGGGGAGCATTCGTCAAAGGAACCATGACTTTTCTGGAATCTGCTGAAAATGAAGTGAAAAAGTTAAGGGAAGAACAGACGAGAGTGATGGAGGTTGTGAAGAAGACGACGGAGTATTATCAGACAGGAGCTATGAAGGACAAAGAAGCTCATCCACTTCAACTTTTTGTGATTGTAAAAGAATTCCTAGACATGGTTGATCAGGTCTGCGTCGGAATAGCCGGGAATCTGCAGAAGAAGAAGTCATCAGCAGGGAGCGCCGGTTCTTCTTCCTCCAAATATCCACCATTGAAGACCCAACCAAGGTTCCCTAACTTGCCTGCACATTTCTTATCAGACAAATCCATATCCAGGAGTTCTTCCAGTGATTCAGACGATGACTAA 2220 47.66 SAMAVIVQRRGSTFLSLFLVFSAARYPLSRCLSNSPQNIETLYPTQIFSNPPAISPPPPPTPPSPVISSSPESTRTRTIATAVVVTAAGTLLLSALLFFLIQKCLRRRQKGRRAGSGSGSGSESRFTGAQRQPVIMAQSEFARLSGNLKGFIVDENGLDVIYWRKLESKRSNNLRKLSVPHLKNKAREEEEEGRKGEKIQELPLLRGKSSTSQVKFSPATELPNRKSRRTLPAPKALPHQSSGSKPPPPPVLGGKPAEESSSSNADQVRLKPLHWDKVNTRDKSHSMVWDRIDGGSFSFDGDLMEALFGTVATNRNSPQKTRNSAAPIGGNSNAPAKIFILDSKKSQNTAIVIKSMSISRDEIVDALTDGHGLESDILEKLARIAPNQEEQSQILNFTGDPLILADAESFLFKLLKTIPSAFIRLDSMLFRSTYDSEILHLKEHLHSIEAGCKELLTRGLFMKLLEAVLKAGNRMNAGTARGNAQAFNLTALRKLSDVKSTDGKTNLLHFVVEEVVRSEGKKCVLNKNASFSRNSSISSTSSINSDHYSTTKDERMKEYMMFGLPVVGGLSAEFSNVKKAATIDYNTLAGICSGLTSRTSGIRQTLQKCVSDGGAFVKGTMTFLESAENEVKKLREEQTRVMEVVKKTTEYYQTGAMKDKEAHPLQLFVIVKEFLDMVDQVCVGIAGNLQKKKSSAGSAGSSSSKYPPLKTQPRFPNLPAHFLSDKSISRSSSSDSDDD 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13797836 13800518 + Bpe005061.1 Bpe11g01744 111889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01744 739 MobiDBLite consensus disorder prediction 50 67 - -
Bpe11g01744 739 Coils Coil 736 739 - -
Bpe11g01744 739 PANTHER FORMIN-LIKE PROTEIN 4 226 734 - -
Bpe11g01744 739 SUPERFAMILY Formin homology 2 domain (FH2 domain) 273 683 - -
Bpe11g01744 739 MobiDBLite consensus disorder prediction 182 274 - -
Bpe11g01744 739 Gene3D Formin, FH2 domain 280 703 IPR042201 -
Bpe11g01744 739 MobiDBLite consensus disorder prediction 111 130 - -
Bpe11g01744 739 MobiDBLite consensus disorder prediction 49 72 - -
Bpe11g01744 739 PANTHER FORMIN-LIKE PROTEIN 4 13 221 - -
Bpe11g01744 739 PANTHER FORMIN-RELATED 13 221 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bpe11g01744 739 SMART it6_source 260 693 IPR015425 -
Bpe11g01744 739 Coils Coil 617 644 - -
Bpe11g01744 739 ProSiteProfiles Formin homology-2 (FH2) domain profile. 260 704 IPR015425 -
Bpe11g01744 739 MobiDBLite consensus disorder prediction 182 202 - -
Bpe11g01744 739 MobiDBLite consensus disorder prediction 692 710 - -
Bpe11g01744 739 Pfam Formin Homology 2 Domain 264 678 IPR015425 -
Bpe11g01744 739 PANTHER FORMIN-RELATED 226 734 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bpe11g01744 739 MobiDBLite consensus disorder prediction 115 130 - -
Bpe11g01744 739 MobiDBLite consensus disorder prediction 205 224 - -
Bpe11g01744 739 MobiDBLite consensus disorder prediction 692 739 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01744 - - - jre:108989824 667.151
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00820 Bpe11g01744 CCT
Bpe10g00820 Bpe11g01744 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01744 Bpe-Chr11:13797836 Bpe15g00301 Bpe-Chr15:14472919 2.16E-90 dispersed
Bpe15g00622 Bpe-Chr15:17072206 Bpe11g01744 Bpe-Chr11:13797836 1.32E-125 transposed
Bpe10g00820 Bpe-Chr10:14247425 Bpe11g01744 Bpe-Chr11:13797836 1.20E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe10g00755 . 126 615 FH2 protein (formin) Gene Family AT3G25500 66.7 1.2e-170 597.4
Bpe15g00301 CCT 431 868 FH2 protein (formin) Gene Family AT3G25500 59.2 3.9e-132 469.5
Bpe13g00127 CCT 423 883 FH2 protein (formin) Gene Family AT3G25500 56.2 2.9e-127 453.4
Bpe05g00226 . 473 872 FH2 protein (formin) Gene Family AT3G25500 55.4 9.4e-110 395.2
Bpe10g00755 . 177 628 FH2 protein (formin) Gene Family AT2G43800 63.7 3.7e-147 519.2
Bpe15g00301 CCT 435 884 FH2 protein (formin) Gene Family AT2G43800 53.8 8.8e-125 444.9
Bpe13g00127 CCT 421 904 FH2 protein (formin) Gene Family AT2G43800 50.9 2.7e-118 423.3
Bpe07g00592 BCT 30 318 FH2 protein (formin) Gene Family AT4G15200 58.1 9.4e-62 234.6
Bpe14g00693 BCT 265 553 FH2 protein (formin) Gene Family AT4G15200 54.5 1.2e-56 217.6
Bpe11g00522 CCT,ECH 498 647 FH2 protein (formin) Gene Family AT4G15200 62.3 5.0e-47 185.7
Bpe08g01143 CCT,ECH 207 354 FH2 protein (formin) Gene Family AT4G15200 61.1 4.7e-45 179.1
Bpe11g00522 CCT,ECH 270 963 FH2 protein (formin) Gene Family AT5G54650 52.2 2.1e-166 583.2
Bpe07g00592 BCT 172 639 FH2 protein (formin) Gene Family AT5G54650 64.3 9.7e-164 574.3
Bpe14g00693 BCT 412 882 FH2 protein (formin) Gene Family AT5G54650 61.3 2.5e-151 533.1
Bpe08g01143 CCT,ECH 217 621 FH2 protein (formin) Gene Family AT5G54650 65.0 1.6e-145 513.8
Bpe05g00226 . 471 877 FH2 protein (formin) Gene Family AT5G54650 52.0 2.3e-109 393.7
Bpe15g00301 CCT 27 887 FH2 protein (formin) Gene Family AT5G67470 54.3 1.2e-219 760.0
Bpe13g00127 CCT 34 911 FH2 protein (formin) Gene Family AT5G67470 54.3 7.6e-201 697.6
Bpe11g01834 . 441 920 FH2 protein (formin) Gene Family AT5G67470 56.7 1.8e-133 473.8
Bpe10g00755 . 173 632 FH2 protein (formin) Gene Family AT5G67470 57.2 9.1e-130 461.5
Bpe05g00226 . 476 875 FH2 protein (formin) Gene Family AT5G67470 53.4 3.1e-109 393.3
Bpe10g00820 CCT,ECH 333 815 FH2 protein (formin) Gene Family AT1G59910 50.9 1.8e-120 430.6
Bpe11g01744 CCT,ECH 267 739 FH2 protein (formin) Gene Family AT1G59910 50.3 2.9e-118 423.3
Bpe13g00300 CCT 994 1304 FH2 protein (formin) Gene Family AT5G07650 75.6 1.3e-127 454.1
Bpe15g00594 CCT 1490 1809 FH2 protein (formin) Gene Family AT5G07650 72.2 2.5e-123 439.9
Bpe14g00599 . 1000 1332 FH2 protein (formin) Gene Family AT5G07650 58.2 2.3e-100 363.6
Bpe13g00300 CCT 918 1305 FH2 protein (formin) Gene Family AT5G07770 68.4 1.1e-139 493.8
Bpe15g00594 CCT 1414 1804 FH2 protein (formin) Gene Family AT5G07770 65.8 2.0e-133 473.0
Bpe14g00599 . 936 1345 FH2 protein (formin) Gene Family AT5G07770 53.6 1.2e-106 384.0
Bpe14g00599 . 930 1334 FH2 protein (formin) Gene Family AT3G32400 69.2 9.4e-153 537.0
Bpe13g00300 CCT 906 1307 FH2 protein (formin) Gene Family AT3G32400 63.7 1.1e-137 486.9
Bpe15g00594 CCT 1414 1809 FH2 protein (formin) Gene Family AT3G32400 64.3 1.1e-137 486.9
Bpe14g00599 . 1 1334 FH2 protein (formin) Gene Family AT2G25050 50.7 1.8e-303 1038.9
Bpe13g00300 CCT 919 1307 FH2 protein (formin) Gene Family AT5G07780 62.3 6.8e-121 431.0
Bpe15g00594 CCT 1415 1809 FH2 protein (formin) Gene Family AT5G07780 60.6 5.4e-118 421.4
Bpe14g00599 . 937 1332 FH2 protein (formin) Gene Family AT5G07780 51.1 2.1e-93 339.7
Bpe13g00300 CCT 1 1307 FH2 protein (formin) Gene Family AT5G07740 51.0 0.0e+00 1102.8
Bpe13g00300 CCT 993 1307 FH2 protein (formin) Gene Family AT5G07760 74.1 1.1e-124 444.5
Bpe15g00594 CCT 1489 1809 FH2 protein (formin) Gene Family AT5G07760 71.1 2.8e-120 429.9
Bpe14g00599 . 1011 1332 FH2 protein (formin) Gene Family AT5G07760 60.1 4.7e-99 359.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007048 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01744 Bpe_Chr11 FPKM 2.197955 2.186424 9.446702 8.785848 14.537621 16.049082 14.392559 13.456678 12.399516 13.460612