Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01747 ATGATGGGAGGAGGGACTACTCAGAAGCTAACAACCAATGATGCATTGGCGTATCTGAAGGCAGTGAAGGACATATTTCAGGACAAAAAGGAAAAATATGAAGACTTTCTTGAAGTTATGAAAGATTTTAAGGCTCAAAGAATTGATACTGCGGGAGTCATTGGAAGAGTAAAGGAATTATTTAAAGGTCATCGTGACTTAATTTTGGGCTTCAATACTTTCTTGCCCAAAGGATATGAGATTACTCTTCCACTTGAGGATGAGCAACCTCCTCATAAAAAACCCGTTGAATTTGAAGAAGCCATCAATTTTGTGAATAAGATTAAGACTCGGTTTCAAGGGGACGATCATGTTTACAAATCATTTCTGGACATTTTGAATATGTATAGAAAGGAAAACAAGTCAATCAGTGAGGTCTACCAGGAGGTTTCTGCACTTTTCCATGATCACAAAGACTTACTCTTTGAGTTCACTCATTTTCTACCTGAGTCATCAGCAGCAACCTCCACTCACTATACTCCTGGTAGAAATTCTATTCTACGTGATAGGAACTCTGCTATGCCTACAATGCGGTCCATGCATGCTGACAAGAAAGTTGCTTCACATACTGACAGTCATATTAGCATTGACCGTCCTGATCCTGACCATGATAGAGCCTTGATGAAAGTAGAGAAAGAACACCGTAGGCGTGGTGAAAAAGAAAAGGATAGGAGGGAGGACAGAGATAGAAGAGAACGTGATAGGGAAAGAGAGGATAGGGATTATGAACATGATGGTAGCCGGGATATTAACATGCAACGGTTCTTGCATAAGAGGAAGTCTCGTAGGGTTGAAGACTCACTTGCTGAACCATTGCATCAAGGTGAAGAGGGTATGTACTGCCAAGAGCTTGCTTTTTGTGAGAAAATGAAAGAGAAGTTGAGAAATGCTGATGACTACCAGGAATTTTTGAAGTGCCTCCATATCTATAGCAAGGAAATTATAACCCGAGATGAGCTGCAATCTTTGGTGGGTGATTTACTTGGAAGATATCCGGATTTGATGGATGGATTTAATGAATTTTTGACATGTTGTGAGAAGAATGATGGATTTCTTGCTGATGTCATGAGTAAAAAGACCTTGTGGAATGGAGGAAGTCTCTCAAGATCAGTGAAGATAGAAGATAGAGATAGAGATAGAGATCATGAGAGAGAAGATGGATATAAAGACCGAGAAAGGGATAGACCTGATAAAAGTGTTGCTTTTGGCAGTAAAGATGCTGGAGGTCACAAGATGTCTTTATTTCCTTGTAAAGACAAGTATTTGTCAAAGCCTATTAATGAACTTGACCTCTCTAATTGTGAACGCTGCACTCCTAGTTATCGTCTTCTGCCCAAAAATTATCCTATCCCTACTGCTAGCCAAAGGTCAGAGCTTGGGGATCAAGTATTGAATGATCATTGGGTATCTGTTACTTCAGGGAGTGAGGATTATTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAAAGCTTGTTTCGATGTGAAGATGATAGGTTTGAACTGGACATGTTGTTAGAGTCTGTGAATGTCACTACCAAGCGTGCTGAAGAATTGTTGGAGAAGATAAACAACAACACAATTAAAACAGACAGTCCAATCCGTATTGAGGACCACTTCACTGCTCTGAATTTAAGGTGCATTGAGAGATTATATGGTGACCATGGACTTGATGTCATGGATGTGCTGAAGAAGAATTCATCCCTTGCTTTGCCGGTTATTTTGACCCGCTTGAAGCAGAAACAAGAAGAGTGGGCACGGTGCCGTACAGATTTCAATAAAGTATGGGCAGATATATATGCAAAGAACTATCACAAATCACTTGATCATCGCAGCTTCTACTTTAAGCAGCAGGATACAAAAAGCTTAAGCACAAAAGGGCTATTGGCAGAGATCAAAGAAATAAGTGAGAAGAAGCGTAAGGAAGATGATGTATTGCTTGCTATTGCTGCCAGAAATAGAAGACCAATTAGTCCGAATTTGGAATTTGAGTATCCTGATCCAGCCATTCATGATGATATTTATCATCTTATGAAGTTTTCATGTGGAGAAGTTTGCAGTACTGAAATGTTGGGTAAGATAATGAAGATTTGGACGACCTTTCTTGAACCTATGTTTGGTGTCCCCCCTCGTCCTCTCGATGCTGAGGACACTGAAGATGTCATCAAGGCAAAAGATGATGTTTCAAAAGGTAGTGCACTAAGTGCAGTAGAGAGTGATGGCAGTCCTGGTGGTGCTGCCATTATCATGAATTTGAAGCAGATAAGTTCTTGCCGAAACGAAGATGAAATTATTCCACTAGAACAATCAAGTTCTTACAGGACTTGGCCTGTGAATGGGGATAATGGTGTTAAAGAGGATGGTTTTCATGAGGTGGATCGCACTGCTCGGAAAAGTGATGCTTTCTCCATTCCTATGCATTCTAAAATGCAGCCAAATGTATCGGCAGCTGATGAATTGTCTGGAGTCTGCAAGCAAGATAATTCTAAAGAACGCTTAGTCAATTCAAAAGCTTCACTTGCTGCTGGAGGGGAGCAAAGTAATGGGAAAACTAACCTAGAAAACACATCAGGATTAAATAATACTCTTTCCAGACCAGGAAATTGTGCTTTGGATAGTGGGCTTGAGTTGCCCGCTTCGGAGGATGGTGACTCAACAAAACCTTTAATATCTTCTAATGGAGTGACAACTGAAGGTATGAAAAATCACAGGTATATGGAAGAGGCTGTTGGACACTTTAAAGTAGAAAGGGAAGAAGGTGAATTGTCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAAGTTATGGAGAAGCTGGTTTAGAAGTAGTCCATGAAGAAAAGGATGGTGCTAGGCAGTATCCAAATGTACCTGGAGAGGAAGAAGTCTGCTGTAGGGAGGCTGGTGGAGCAAATGATGCAGACGCTGACGGCGAAGGTGAGGAAAGTGCTCAGAGGTCATCAGAGGATAGTGACAATGTTTTCGAGAATGGTGATGTTTCTGTAAGTGAATCTGGAGAGGGTGAAGATTGTTCTCATGAAGATCACGAGGAAGACGGGGACCATGATGAACATGATCATAAGGCTGAGAGTGAAGGCGAGGCTGAAGGGATGGCTGATGCTCATGATATTGAAGGAGACGAAACATCTTTACCATTTTCAGAACGATTTTTACTTTCCGTTAAACCCCTCGCTAAATTTGCCCCACTCGCACTGCATGGAAAAGAAAAGGCATTACATGTTTATTATGGGAATGACTCTATCTATGTGCTTTTCAGGCTTCACCAGGTAAGGCTTATTGAATATCTTAAATTGGAGCTATCTGTATACTCATTTCTTATTATTCATTTTACTCATCTGAAGACACTGTATGAGAGGCTACTATCAGCTAAGACAAATTCGTCATCTGCTGAGAGGAAGTGGAGGGCTTCAAGCGATGCAACTTCTACTAATCTTTACGCCAGGTTCATGGTTGCACTTTACACTTTACTTGAAGGTTCCTCCGATAATACCAAATATGAGGACGATTGTCGAGCTGTCGTTGGAACCCAATCATATGTTCTATTCACATTAGATAAGCTGATATATAAAATTGTTAAACAGGTTCAAGCAATTGCCTCCGATGAGATGGATAACAAGCTTCTTCAACTTTATGCTTATGAAAAGTCGAGAAAACCTGGAAGATTTATTGATTTAGTTTATCATGAAAATGCTCGTGTCCTTCTGCACGATGAGAACATTTATCGTATTGAATGTTCATTCTCTCCCACTCGTATATCTATTCAGCTTATGGACTATGGTCATGATAAGCCTGAAGTGACCGCTGTATCATTGGACCCTAATTTTTCATCTTATCTGCACAATGACTTTCTATCTGTACTTCCCGACAAAAAAGGGAAGTCTGGGATCTTCTTGAAGAGAAACAAATGTAAATATTCTTCAAATGATGACATTCTTTCTACATCCCTGGCCATCGAAGAAGTTAAAGTTGTCAATGGTCTGGAGTGTAAGATAGCTTGTAATTCATCAAAGGTCTCGTACGTTTTAGATACAGAAGACTTTCTGTTTCGTAGAAAAAGCAAACGAAAAAGATGGACGGCAAAGGGTGAAAGCCAAGACCGGTCGTCTTCAAGTGGTAGTACTTCAACCTCAAGTAGACTACAACGGTTTCACAGATTACTTGGGAGCTCATAA 4233 40.37 MMGGGTTQKLTTNDALAYLKAVKDIFQDKKEKYEDFLEVMKDFKAQRIDTAGVIGRVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPHKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSISEVYQEVSALFHDHKDLLFEFTHFLPESSAATSTHYTPGRNSILRDRNSAMPTMRSMHADKKVASHTDSHISIDRPDPDHDRALMKVEKEHRRRGEKEKDRREDRDRRERDREREDRDYEHDGSRDINMQRFLHKRKSRRVEDSLAEPLHQGEEGMYCQELAFCEKMKEKLRNADDYQEFLKCLHIYSKEIITRDELQSLVGDLLGRYPDLMDGFNEFLTCCEKNDGFLADVMSKKTLWNGGSLSRSVKIEDRDRDRDHEREDGYKDRERDRPDKSVAFGSKDAGGHKMSLFPCKDKYLSKPINELDLSNCERCTPSYRLLPKNYPIPTASQRSELGDQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRAEELLEKINNNTIKTDSPIRIEDHFTALNLRCIERLYGDHGLDVMDVLKKNSSLALPVILTRLKQKQEEWARCRTDFNKVWADIYAKNYHKSLDHRSFYFKQQDTKSLSTKGLLAEIKEISEKKRKEDDVLLAIAARNRRPISPNLEFEYPDPAIHDDIYHLMKFSCGEVCSTEMLGKIMKIWTTFLEPMFGVPPRPLDAEDTEDVIKAKDDVSKGSALSAVESDGSPGGAAIIMNLKQISSCRNEDEIIPLEQSSSYRTWPVNGDNGVKEDGFHEVDRTARKSDAFSIPMHSKMQPNVSAADELSGVCKQDNSKERLVNSKASLAAGGEQSNGKTNLENTSGLNNTLSRPGNCALDSGLELPASEDGDSTKPLISSNGVTTEGMKNHRYMEEAVGHFKVEREEGELSPNGDFEEDNFASYGEAGLEVVHEEKDGARQYPNVPGEEEVCCREAGGANDADADGEGEESAQRSSEDSDNVFENGDVSVSESGEGEDCSHEDHEEDGDHDEHDHKAESEGEAEGMADAHDIEGDETSLPFSERFLLSVKPLAKFAPLALHGKEKALHVYYGNDSIYVLFRLHQVRLIEYLKLELSVYSFLIIHFTHLKTLYERLLSAKTNSSSAERKWRASSDATSTNLYARFMVALYTLLEGSSDNTKYEDDCRAVVGTQSYVLFTLDKLIYKIVKQVQAIASDEMDNKLLQLYAYEKSRKPGRFIDLVYHENARVLLHDENIYRIECSFSPTRISIQLMDYGHDKPEVTAVSLDPNFSSYLHNDFLSVLPDKKGKSGIFLKRNKCKYSSNDDILSTSLAIEEVKVVNGLECKIACNSSKVSYVLDTEDFLFRRKSKRKRWTAKGESQDRSSSSGSTSTSSRLQRFHRLLGSS 1410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 13809689 13818084 - Bpe005064.1 Bpe11g01747 111892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01747 1410 ProSiteProfiles PAH domain profile. 8 78 IPR003822 GO:0006355
Bpe11g01747 1410 Gene3D Paired amphipathic helix 290 360 IPR036600 GO:0006355
Bpe11g01747 1410 PANTHER SIN3B-RELATED 7 1113 IPR039774 GO:0003714
Bpe11g01747 1410 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 7 1113 - -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 386 414 - -
Bpe11g01747 1410 SUPERFAMILY PAH2 domain 6 77 IPR036600 GO:0006355
Bpe11g01747 1410 SMART hdac_interact2seq4b 446 546 IPR013194 -
Bpe11g01747 1410 Pfam Sin3 family co-repressor 448 540 IPR013194 -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 195 258 - -
Bpe11g01747 1410 SUPERFAMILY PAH2 domain 295 357 IPR036600 GO:0006355
Bpe11g01747 1410 ProSiteProfiles PAH domain profile. 94 164 IPR003822 GO:0006355
Bpe11g01747 1410 PANTHER SIN3B-RELATED 1130 1385 IPR039774 GO:0003714
Bpe11g01747 1410 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1130 1385 - -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 852 914 - -
Bpe11g01747 1410 ProSiteProfiles PAH domain profile. 288 358 IPR003822 GO:0006355
Bpe11g01747 1410 Coils Coil 519 539 - -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 1379 1410 - -
Bpe11g01747 1410 Gene3D Paired amphipathic helix 92 165 IPR036600 GO:0006355
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 190 258 - -
Bpe11g01747 1410 Pfam Paired amphipathic helix repeat 117 161 IPR003822 GO:0006355
Bpe11g01747 1410 Pfam Paired amphipathic helix repeat 31 75 IPR003822 GO:0006355
Bpe11g01747 1410 Pfam Paired amphipathic helix repeat 311 355 IPR003822 GO:0006355
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 983 1051 - -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 1384 1410 - -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 386 418 - -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 992 1006 - -
Bpe11g01747 1410 Gene3D Paired amphipathic helix 14 76 IPR036600 GO:0006355
Bpe11g01747 1410 SUPERFAMILY PAH2 domain 90 162 IPR036600 GO:0006355
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 898 912 - -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 853 881 - -
Bpe11g01747 1410 MobiDBLite consensus disorder prediction 1031 1051 - -
Bpe11g01747 1410 Pfam C-terminal domain of Sin3a protein 1095 1368 IPR031693 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01747 K11644 SIN3A; paired amphipathic helix protein Sin3a - mnt:21394293 2073.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe10g00817 Bpe11g01747 CCT
Bpe11g01747 Bpe13g01441 CCT
Bpe11g01747 Bpe13g01441 ECH
Bpe10g00817 Bpe11g01747 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00817 Bpe-Chr10:14221612 Bpe11g01747 Bpe-Chr11:13809689 0 wgd
Bpe11g01747 Bpe-Chr11:13809689 Bpe13g01441 Bpe-Chr13:19687639 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003861 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22148 PF16879 Sin3a_C 1.80E-51 No_clan Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01747 Bpe_Chr11 FPKM 1.144812 2.22654 5.536333 5.304602 6.057543 4.943731 5.989415 13.195306 10.82239 13.008444