Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01776 ATGGATGAATTTTACGGACTGGAATCGAAATCGGAATATTCTGATAAAGCGTTGATGTCGCCGGAGAATATCATATTGCCGGTGGATTACCAAGGGTTGCTGGATTCCGGTGAATTCCGCGATAGGATTCCGGTGTTCGGATCCGATGACTTGCTTTCCGCGGCGTCGGCTATATCGGAAGCTGAGGCTGCTTCCATTTCCCCCAAAATTCGACGGCAAGAAGATGCGAACACTTTGATCAAAGCTAAAATTGCATCGCATCCTTATTATCTTCGTTTGCTAGAGGCTTACATCGATTGCCAGAAGGTGGGGGCGCCACCGGAGATAGCAGCTGTTTTGGAGGACATCCGGCGAGAAAACGACTTTTCAAAGCAAGACGTTGCCTCCACGTGTGGTGAAGTCGATCCATCTCTTGACGAGTTTATGGAAACCTACTGTGAGATGCTGGTGAAGTACAAGTCAGATCTCGAAAGACCTTTCGGTGAAGCAACCTCATTCTTGAACGAGATTGAAGAGCAGCTGAGCAATCTATGCACTGGTCCGTCGGTAAGAAGCACCTCCAATGAAGGCTTTGCATCATCAGATGATGAGTTGAGCGTAGGGAATGTAGAGTTCCAGGAAACTCAAACCAAGGGAGACGGAAAGGACCTGAAAGATAGGCTTTTCCGCAGGTTCGGCAGCCATATTAGTAACCTGAAGCACGAGTTTTCAAAGAAGAAAAAGAAAGGAAAATTACCAAAAGAAGCTAAACAAGTACTTCTTGAATGGTGGAATGTTCACTGCAAATGGCCTTATCCCACGGAAGCTGATAAAATTTCTCTGGCGGAAGCGACGGGATTAGATCCGAAGCAAATAAACAACTGGTTCATTAATCAGCGGAAAAGACACTGGAAACCTACAGAGGGTATGCATTTTGAAGCGATGGAGAATCTGCCGGGGCGAATTCTTTACAGGTAA 957 46.29 MDEFYGLESKSEYSDKALMSPENIILPVDYQGLLDSGEFRDRIPVFGSDDLLSAASAISEAEAASISPKIRRQEDANTLIKAKIASHPYYLRLLEAYIDCQKVGAPPEIAAVLEDIRRENDFSKQDVASTCGEVDPSLDEFMETYCEMLVKYKSDLERPFGEATSFLNEIEEQLSNLCTGPSVRSTSNEGFASSDDELSVGNVEFQETQTKGDGKDLKDRLFRRFGSHISNLKHEFSKKKKKGKLPKEAKQVLLEWWNVHCKWPYPTEADKISLAEATGLDPKQINNWFINQRKRHWKPTEGMHFEAMENLPGRILYR 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14122221 14127965 - Bpe005095.1 Bpe11g01776 111921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01776 318 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 40 315 - -
Bpe11g01776 318 Pfam ELK domain 216 237 IPR005539 GO:0003677
Bpe11g01776 318 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Bpe11g01776 318 ProSiteProfiles ELK domain profile. 216 236 IPR005539 GO:0003677
Bpe11g01776 318 Pfam KNOX1 domain 80 121 IPR005540 GO:0003677|GO:0005634
Bpe11g01776 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 315 - -
Bpe11g01776 318 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Bpe11g01776 318 SMART HOX_1 238 303 IPR001356 GO:0003677
Bpe11g01776 318 Pfam Homeobox KN domain 256 295 IPR008422 GO:0003677|GO:0006355
Bpe11g01776 318 ProSiteProfiles 'Homeobox' domain profile. 236 299 IPR001356 GO:0003677
Bpe11g01776 318 SUPERFAMILY Homeodomain-like 237 307 IPR009057 -
Bpe11g01776 318 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Bpe11g01776 318 SMART ELK_2 216 237 IPR005539 GO:0003677
Bpe11g01776 318 CDD homeodomain 248 299 IPR001356 GO:0003677
Bpe11g01776 318 Gene3D - 233 308 - -
Bpe11g01776 318 Pfam KNOX2 domain 134 178 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g01088 Bpe-Chr7:16241195 Bpe11g01776 Bpe-Chr11:14122221 2.11E-14 dispersed
Bpe08g01469 Bpe-Chr8:15405169 Bpe11g01776 Bpe-Chr11:14122221 5.61E-28 dispersed
Bpe11g00693 Bpe-Chr11:5336908 Bpe11g01776 Bpe-Chr11:14122221 1.01E-27 dispersed
Bpe11g01776 Bpe-Chr11:14122221 Bpe12g00659 Bpe-Chr12:12206010 2.95E-99 dispersed
Bpe11g01776 Bpe-Chr11:14122221 Bpe13g01476 Bpe-Chr13:20040897 2.01E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22149 PF03791 KNOX2 1.60E-22 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01776 - - csv:101211876 435.261