Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01781 AATATGACAACACTGAATCATCTTCTTGATCTTCCAGAACAGATTTGTTATGTGCAATGTGGGTTCTGTACCACAATACTGCTGGTGAGTGTTCCTTACAGCAGCTTGTCAATGGTGGTGACAGTAAGATGTGGACACTGCTCTAGCCTCCTCTCCGTCAATATGATGAAAGCCTCTTTCGTCCCATTCCATCTCTTAGCTTCTCTCACCCAAGATTTGGTACATATTAAAGCTTCTATTCGTCGACTGGATCTTAACATGGATAATTGGACTACTCTAATCTTGCTGGTTTTTTTTTTGGTCGCTCAGCCGAAAGAAGATAGCCAAATGATCGAAAACCAGGCAAGTTTCGACGGTAGCGATGCATCTATGATGACCCTTTATGACTACGAGGACGAGGATATTGTTCCTACAAATCCTGTCGTGAACAAACCCCCGGAGAAGAGACAGAGAGCTCCGTCGGCTTATAATCGCTTCATCAAGGATGAGATCAGAAGGCTGAAGGCTGAAAACCCACACATGGCTCATAAAGAAGCCTTCAAAACAGCTGCAAAAAATGTGAGTGCGGTAAAAAAAAACACATTAAAACTTGCATAA 597 42.71 NMTTLNHLLDLPEQICYVQCGFCTTILLVSVPYSSLSMVVTVRCGHCSSLLSVNMMKASFVPFHLLASLTQDLVHIKASIRRLDLNMDNWTTLILLVFFLVAQPKEDSQMIENQASFDGSDASMMTLYDYEDEDIVPTNPVVNKPPEKRQRAPSAYNRFIKDEIRRLKAENPHMAHKEAFKTAAKNVSAVKKNTLKLA 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14157309 14158158 + Bpe005100.1 Bpe11g01781 111926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01781 198 SUPERFAMILY HMG-box 141 185 IPR036910 -
Bpe11g01781 198 PANTHER PROTEIN YABBY 6-RELATED 2 189 IPR006780 GO:0007275
Bpe11g01781 198 Pfam YABBY protein 12 187 IPR006780 GO:0007275
Bpe11g01781 198 PANTHER AXIAL REGULATOR YABBY 4 2 189 - -
Bpe11g01781 198 Gene3D High mobility group box domain 139 194 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01781 K25796 YAB; plant-specific transcription factor YABBY family protein - vvi:100258462 216.853
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01781 Bpe-Chr11:14157309 Bpe05g00592 Bpe-Chr5:19976884 8.82E-36 dispersed
Bpe11g01781 Bpe-Chr11:14157309 Bpe05g01079 Bpe-Chr5:23283427 1.10E-39 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g01366 . 2 163 C2C2-YABBY Transcription Factor Family AT1G69180 56.1 2.6e-44 175.3
Bpe05g01079 . 64 218 C2C2-YABBY Transcription Factor Family AT2G45190 64.8 2.0e-51 198.7
Bpe05g00592 BCT,CCT 63 218 C2C2-YABBY Transcription Factor Family AT2G45190 53.6 2.8e-40 161.8
Bpe11g00259 CCT 62 212 C2C2-YABBY Transcription Factor Family AT2G45190 56.2 4.7e-40 161.0
Bpe07g00159 BCT,CCT 62 217 C2C2-YABBY Transcription Factor Family AT2G45190 50.9 2.2e-37 152.1
Bpe01g00275 . 1 183 C2C2-YABBY Transcription Factor Family AT1G08465 58.5 8.9e-56 213.4
Bpe05g00592 BCT,CCT 20 192 C2C2-YABBY Transcription Factor Family AT1G08465 56.1 2.1e-44 175.6
Bpe11g00259 CCT 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 56.3 8.7e-43 170.2
Bpe07g00159 BCT,CCT 19 189 C2C2-YABBY Transcription Factor Family AT1G08465 55.0 1.1e-42 169.9
Bpe01g00747 BCT 9 172 C2C2-YABBY Transcription Factor Family AT1G08465 56.5 1.5e-42 169.5
Bpe02g02129 BCT 5 176 C2C2-YABBY Transcription Factor Family AT1G08465 52.5 9.6e-42 166.8
Bpe08g00230 . 1 146 C2C2-YABBY Transcription Factor Family AT1G08465 61.8 1.2e-41 166.4
Bpe05g01079 . 22 195 C2C2-YABBY Transcription Factor Family AT1G08465 53.4 9.9e-39 156.8
Bpe05g01079 . 32 216 C2C2-YABBY Transcription Factor Family AT4G00180 54.5 3.5e-48 188.3
Bpe11g00259 CCT 29 211 C2C2-YABBY Transcription Factor Family AT4G00180 51.9 2.5e-46 182.2
Bpe05g00592 BCT,CCT 30 216 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 3.1e-44 175.3
Bpe07g00159 BCT,CCT 29 209 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 2.9e-42 168.7
Bpe11g01781 . 3 186 C2C2-YABBY Transcription Factor Family AT1G23420 60.0 2.3e-41 166.0
Bpe02g02129 BCT 7 170 C2C2-YABBY Transcription Factor Family AT2G26580 74.4 3.2e-65 244.6
Bpe01g00747 BCT 7 171 C2C2-YABBY Transcription Factor Family AT2G26580 67.9 4.2e-57 217.6
Bpe01g00275 . 1 164 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 2.7e-48 188.3
Bpe13g01156 . 7 152 C2C2-YABBY Transcription Factor Family AT2G26580 65.8 1.1e-44 176.4
Bpe05g00592 BCT,CCT 20 190 C2C2-YABBY Transcription Factor Family AT2G26580 52.9 1.6e-43 172.6
Bpe07g00159 BCT,CCT 19 189 C2C2-YABBY Transcription Factor Family AT2G26580 50.9 3.2e-41 164.9
Bpe11g00259 CCT 19 177 C2C2-YABBY Transcription Factor Family AT2G26580 55.3 4.2e-41 164.5
Bpe05g01079 . 22 187 C2C2-YABBY Transcription Factor Family AT2G26580 53.0 3.4e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012058 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22150 PF04690 YABBY 4.80E-56 CL0114 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01781 Bpe_Chr11 FPKM 15.876646 17.655762 0.249627 0.118806 0.377294 0.391985 0.537197 0.48853 0.543243 0.617563