Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01781 AATATGACAACACTGAATCATCTTCTTGATCTTCCAGAACAGATTTGTTATGTGCAATGTGGGTTCTGTACCACAATACTGCTGGTGAGTGTTCCTTACAGCAGCTTGTCAATGGTGGTGACAGTAAGATGTGGACACTGCTCTAGCCTCCTCTCCGTCAATATGATGAAAGCCTCTTTCGTCCCATTCCATCTCTTAGCTTCTCTCACCCAAGATTTGGTACATATTAAAGCTTCTATTCGTCGACTGGATCTTAACATGGATAATTGGACTACTCTAATCTTGCTGGTTTTTTTTTTGGTCGCTCAGCCGAAAGAAGATAGCCAAATGATCGAAAACCAGGCAAGTTTCGACGGTAGCGATGCATCTATGATGACCCTTTATGACTACGAGGACGAGGATATTGTTCCTACAAATCCTGTCGTGAACAAACCCCCGGAGAAGAGACAGAGAGCTCCGTCGGCTTATAATCGCTTCATCAAGGATGAGATCAGAAGGCTGAAGGCTGAAAACCCACACATGGCTCATAAAGAAGCCTTCAAAACAGCTGCAAAAAATGTGAGTGCGGTAAAAAAAAACACATTAAAACTTGCATAA 597 42.71 NMTTLNHLLDLPEQICYVQCGFCTTILLVSVPYSSLSMVVTVRCGHCSSLLSVNMMKASFVPFHLLASLTQDLVHIKASIRRLDLNMDNWTTLILLVFFLVAQPKEDSQMIENQASFDGSDASMMTLYDYEDEDIVPTNPVVNKPPEKRQRAPSAYNRFIKDEIRRLKAENPHMAHKEAFKTAAKNVSAVKKNTLKLA 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14157309 14158158 + Bpe005100.1 Bpe11g01781 111926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01781 198 SUPERFAMILY HMG-box 141 185 IPR036910 -
Bpe11g01781 198 PANTHER PROTEIN YABBY 6-RELATED 2 189 IPR006780 GO:0007275
Bpe11g01781 198 Pfam YABBY protein 12 187 IPR006780 GO:0007275
Bpe11g01781 198 PANTHER AXIAL REGULATOR YABBY 4 2 189 - -
Bpe11g01781 198 Gene3D High mobility group box domain 139 194 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g01781 Bpe-Chr11:14157309 Bpe05g00592 Bpe-Chr5:19976884 8.82E-36 dispersed
Bpe11g01781 Bpe-Chr11:14157309 Bpe05g01079 Bpe-Chr5:23283427 1.10E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22150 PF04690 YABBY 4.80E-56 CL0114 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01781 K25796 - vvi:100258462 216.853