Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g01834 ATGTCGACGGCTGTTTTGCTGCGTCTGATCGTTCTTCTCCTTTGCGTCGCACTGCATCTGTCGCCGATCACCGCTCGCCAGCAGACCCGTCGGATACTGCACCAACCTTTTTTCCCTCAAGATTCCTCTCCCCCTTCTCAGCCACCGTCTTTTTCTCCGCAGCCTCAGCAGCAGCAGCAGCAACAACTGCCTAAACTCCCATTCTCCTCCTCGTCTTCGCAGTCGCCGCCTTTCTTCCCGTTCTACAGCACTCCGCCACCCCCTCCTACCGCCACCGCTCTCGCTACATTTCCCGCCAACATTTCCTCCCTTCTTTTGCCCCAACCCACCTCTCACCCTCACAGTCATATCCTCGCCATCGTTGTCTCTACCTCTCTCCTCTCTGCCGCTCTCTTCGCAGCGCTCGCCGCTTTCCTTTTCTACCGAAAGAATCGTGCTGTTCGTCTCGGAGGCAAGATCTCGAGAACTGACAGCCTCAGTTTATACCCACCTAACATCGCCACCTCTGATGGTGGATTCAAGGCGCGTCGCACACTGAACACGAGCTCAGACTTCCTCTACCTTGGAACATTAGTGAATTCTAGAGGGATCTATGAGGAAAATGTGGAGAGCGGTTGCGGCGGTGGCATTCCAATCGGAGTATCAGCCACGCCCAGCCGGAACCTTGGATCGCCGGAGCTTAAGCCACTTCCTCCACTTGCTCGACACCAGTCGTTACAAGAAAAATATAGATATGACGAATTAGGTTCGGTTACAAATGAGCTAGAAGATGACGGAGAAGAGTTCTTCTCGCCGAGAGGCTCTTCAGGAGGAAAAGGAAATCTTAGCCGAACGGGTTCGAGCTCTCGGAAAATGTTTCAGAATGTAGAAGCCGAAAAACATGGCACTAGAAGTGTCAATCTGAAGACGTCGTCATATCCTTCCTCTTATTCTGGTTCACCAACACTTTCTGTCTCCAACAGTCCTTCTCTGCCATTGATAATGAGCCCTTCTAGCTTAAATTCAAAATCACCGGACTCTGTTATCATTTTCCCGGCTCCACTACGACCTCTTCCGGCTCGGCCTATCACATCCACATCCCTATCGTCGTCTTCCTCGTCTTCACCATCACACAAAGATTTAGGAAACACCAAAAATGCCCCTGCAAGAAAGTCTGATTCATCAGTACCAGAAATGCCACTTCAGACTGGAGATACGGCTGCTGTGGAGCCATCGCTGGCCCCTCCTCCACCTCCACCTCCTCCACGGAAGCTCTGGGAGATTCCAGCTACACCAAACCTCACTAAAGAGCCTAACTTAAGACCCCCGGTCCTTCTTACGCCATCAAGACCTGCTGGATTCCAAAATTTTGCTCCAATTTCTTCTTCCGATCAACTGAGCGGCAATACAATGGCGGAAGGAAACGACGGAACTCCAAAGCCAAAGTTGAAGCCTTTACATTGGGACAAGGTTAGGGCGAGCTCCGACAGAGCTATGGTTTGGGATCAGATTAAATCCAGCTCTTTCCAGTTAAATGAGGAGATGATCGAGACACTTTTCATGGCAAATAATACAAACTCCACGCAGAAAGATAATGTTAGGCGATCAGTAATCCCTTCCCCTCACCCGGAGAACTGGGTTCTTGATTCGAAGAAGTCTCAGAACATTGCGATTTTGCTGAGGGCACTGAATGTCACCACTGATGAAGTTTGTGAAGCCCTTTTGGAAGCAGGCAATGCTGATAGTTTGGGTGCAGAATTACTCGAAAGTTTATTGAAGATGGCACCCACCAAAGAAGAGGAAATCAAACTGAGAGAATTTAAAGATGAATCCCCGCTTAAGCTTGGCTCGGCAGAGAAATTTCTCAAGGCAGTTCTGGATATACCATTTGCGTTTCGGAGGATAGATACAATGCTTTACATAGCTAATTTTGATTCTGAAATTGAATACCTGAAAAGGTCTTTTGACACGCTTCAGGCTGCTTGTGAAGAATTGAAGACTAGCCGAATGTTCCTCAAACTTCTAGAAGCAGTGCTCAAAACTGGAAACCGCATGAATGTTGGAACAAACCGAGGCGATGCTCATGCCTTTAAACTCGACACCCTTCTCAAGCTCGTTGATATAAAAGGAACTGATGGAAAAACAACTCTTTTGCACTTTGTCGTCCAGGAAATTATAAAAGCTGAAGGCTTTCGTCTTTCTGGCTCCAACCAGCTAGAAACAATCGACAACAATCAGCCATCATCTTTGACCGATGATGTTCGACTTAAAAAACTAGGCCTGCAAGTAGTTTCAGGTCTGAGAGGGGAGCTTTCAAATGTGAAGAAAGCTGCTGCAATGGACTCTGAAACTCTAAGAAACGAGGCTTCAAAACTTGTTGGAGGGATTGAGAAAATTGAGGATGTGGTGAAGTTAAACGAAGATATAGCCTTGAAAATGAATAGCTGGAAGTTCTCAGAGTCCATGAAAGAGTTTCTGTGCAAAGCAGAGGAGGAAATTATCAGAACCCAAGCACAAGAGAGCGTTGCTCTTTCGATGGTGAAGGAAGTGACAGAGTACTTCCATGGCAACTCAGCTATGGAAGAAGCTCATCCTCTCCGTATTTTCACAGTCGTGAGGGATTTTCTTGCAATACTCGACCAGGTTTGCAAGGAGGTAGGGAAAATTAATGAGCGAGCGATAGTGGGGTACACTCGACTATTTCCCGTTCCGGTGAATCCAACTCTCGCACCGGCTTTTCCGAGCCGACAGCATTCTGGTTCTTCAGAAGATGAAAGCTCATAA 2763 47.74 MSTAVLLRLIVLLLCVALHLSPITARQQTRRILHQPFFPQDSSPPSQPPSFSPQPQQQQQQQLPKLPFSSSSSQSPPFFPFYSTPPPPPTATALATFPANISSLLLPQPTSHPHSHILAIVVSTSLLSAALFAALAAFLFYRKNRAVRLGGKISRTDSLSLYPPNIATSDGGFKARRTLNTSSDFLYLGTLVNSRGIYEENVESGCGGGIPIGVSATPSRNLGSPELKPLPPLARHQSLQEKYRYDELGSVTNELEDDGEEFFSPRGSSGGKGNLSRTGSSSRKMFQNVEAEKHGTRSVNLKTSSYPSSYSGSPTLSVSNSPSLPLIMSPSSLNSKSPDSVIIFPAPLRPLPARPITSTSLSSSSSSSPSHKDLGNTKNAPARKSDSSVPEMPLQTGDTAAVEPSLAPPPPPPPPRKLWEIPATPNLTKEPNLRPPVLLTPSRPAGFQNFAPISSSDQLSGNTMAEGNDGTPKPKLKPLHWDKVRASSDRAMVWDQIKSSSFQLNEEMIETLFMANNTNSTQKDNVRRSVIPSPHPENWVLDSKKSQNIAILLRALNVTTDEVCEALLEAGNADSLGAELLESLLKMAPTKEEEIKLREFKDESPLKLGSAEKFLKAVLDIPFAFRRIDTMLYIANFDSEIEYLKRSFDTLQAACEELKTSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIKAEGFRLSGSNQLETIDNNQPSSLTDDVRLKKLGLQVVSGLRGELSNVKKAAAMDSETLRNEASKLVGGIEKIEDVVKLNEDIALKMNSWKFSESMKEFLCKAEEEIIRTQAQESVALSMVKEVTEYFHGNSAMEEAHPLRIFTVVRDFLAILDQVCKEVGKINERAIVGYTRLFPVPVNPTLAPAFPSRQHSGSSEDESS 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14743671 14747197 + Bpe005155.1 Bpe11g01834 111979

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g01834 920 PANTHER FORMIN-RELATED 10 387 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bpe11g01834 920 MobiDBLite consensus disorder prediction 452 467 - -
Bpe11g01834 920 PANTHER FORMIN-LIKE PROTEIN 1 399 919 - -
Bpe11g01834 920 PANTHER FORMIN-LIKE PROTEIN 1 10 387 - -
Bpe11g01834 920 PANTHER FORMIN-RELATED 399 919 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Bpe11g01834 920 SUPERFAMILY Formin homology 2 domain (FH2 domain) 408 886 - -
Bpe11g01834 920 SMART it6_source 466 887 IPR015425 -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 258 321 - -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 36 82 - -
Bpe11g01834 920 ProSiteProfiles Formin homology-2 (FH2) domain profile. 466 898 IPR015425 -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 355 394 - -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 404 420 - -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 452 478 - -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 53 78 - -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 355 435 - -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 269 286 - -
Bpe11g01834 920 MobiDBLite consensus disorder prediction 298 321 - -
Bpe11g01834 920 Gene3D Formin, FH2 domain 461 883 IPR042201 -
Bpe11g01834 920 Pfam Formin Homology 2 Domain 469 872 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g01834 - - - pper:18769652 901.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00226 Bpe-Chr5:14389873 Bpe11g01834 Bpe-Chr11:14743671 1.45E-133 dispersed
Bpe11g01834 Bpe-Chr11:14743671 Bpe15g00301 Bpe-Chr15:14472919 4.07E-169 dispersed
Bpe10g00755 Bpe-Chr10:13845484 Bpe11g01834 Bpe-Chr11:14743671 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe10g00755 . 126 615 FH2 protein (formin) Gene Family AT3G25500 66.7 1.2e-170 597.4
Bpe15g00301 CCT 431 868 FH2 protein (formin) Gene Family AT3G25500 59.2 3.9e-132 469.5
Bpe13g00127 CCT 423 883 FH2 protein (formin) Gene Family AT3G25500 56.2 2.9e-127 453.4
Bpe05g00226 . 473 872 FH2 protein (formin) Gene Family AT3G25500 55.4 9.4e-110 395.2
Bpe10g00755 . 177 628 FH2 protein (formin) Gene Family AT2G43800 63.7 3.7e-147 519.2
Bpe15g00301 CCT 435 884 FH2 protein (formin) Gene Family AT2G43800 53.8 8.8e-125 444.9
Bpe13g00127 CCT 421 904 FH2 protein (formin) Gene Family AT2G43800 50.9 2.7e-118 423.3
Bpe07g00592 BCT 30 318 FH2 protein (formin) Gene Family AT4G15200 58.1 9.4e-62 234.6
Bpe14g00693 BCT 265 553 FH2 protein (formin) Gene Family AT4G15200 54.5 1.2e-56 217.6
Bpe11g00522 CCT,ECH 498 647 FH2 protein (formin) Gene Family AT4G15200 62.3 5.0e-47 185.7
Bpe08g01143 CCT,ECH 207 354 FH2 protein (formin) Gene Family AT4G15200 61.1 4.7e-45 179.1
Bpe11g00522 CCT,ECH 270 963 FH2 protein (formin) Gene Family AT5G54650 52.2 2.1e-166 583.2
Bpe07g00592 BCT 172 639 FH2 protein (formin) Gene Family AT5G54650 64.3 9.7e-164 574.3
Bpe14g00693 BCT 412 882 FH2 protein (formin) Gene Family AT5G54650 61.3 2.5e-151 533.1
Bpe08g01143 CCT,ECH 217 621 FH2 protein (formin) Gene Family AT5G54650 65.0 1.6e-145 513.8
Bpe05g00226 . 471 877 FH2 protein (formin) Gene Family AT5G54650 52.0 2.3e-109 393.7
Bpe15g00301 CCT 27 887 FH2 protein (formin) Gene Family AT5G67470 54.3 1.2e-219 760.0
Bpe13g00127 CCT 34 911 FH2 protein (formin) Gene Family AT5G67470 54.3 7.6e-201 697.6
Bpe11g01834 . 441 920 FH2 protein (formin) Gene Family AT5G67470 56.7 1.8e-133 473.8
Bpe10g00755 . 173 632 FH2 protein (formin) Gene Family AT5G67470 57.2 9.1e-130 461.5
Bpe05g00226 . 476 875 FH2 protein (formin) Gene Family AT5G67470 53.4 3.1e-109 393.3
Bpe10g00820 CCT,ECH 333 815 FH2 protein (formin) Gene Family AT1G59910 50.9 1.8e-120 430.6
Bpe11g01744 CCT,ECH 267 739 FH2 protein (formin) Gene Family AT1G59910 50.3 2.9e-118 423.3
Bpe13g00300 CCT 994 1304 FH2 protein (formin) Gene Family AT5G07650 75.6 1.3e-127 454.1
Bpe15g00594 CCT 1490 1809 FH2 protein (formin) Gene Family AT5G07650 72.2 2.5e-123 439.9
Bpe14g00599 . 1000 1332 FH2 protein (formin) Gene Family AT5G07650 58.2 2.3e-100 363.6
Bpe13g00300 CCT 918 1305 FH2 protein (formin) Gene Family AT5G07770 68.4 1.1e-139 493.8
Bpe15g00594 CCT 1414 1804 FH2 protein (formin) Gene Family AT5G07770 65.8 2.0e-133 473.0
Bpe14g00599 . 936 1345 FH2 protein (formin) Gene Family AT5G07770 53.6 1.2e-106 384.0
Bpe14g00599 . 930 1334 FH2 protein (formin) Gene Family AT3G32400 69.2 9.4e-153 537.0
Bpe13g00300 CCT 906 1307 FH2 protein (formin) Gene Family AT3G32400 63.7 1.1e-137 486.9
Bpe15g00594 CCT 1414 1809 FH2 protein (formin) Gene Family AT3G32400 64.3 1.1e-137 486.9
Bpe14g00599 . 1 1334 FH2 protein (formin) Gene Family AT2G25050 50.7 1.8e-303 1038.9
Bpe13g00300 CCT 919 1307 FH2 protein (formin) Gene Family AT5G07780 62.3 6.8e-121 431.0
Bpe15g00594 CCT 1415 1809 FH2 protein (formin) Gene Family AT5G07780 60.6 5.4e-118 421.4
Bpe14g00599 . 937 1332 FH2 protein (formin) Gene Family AT5G07780 51.1 2.1e-93 339.7
Bpe13g00300 CCT 1 1307 FH2 protein (formin) Gene Family AT5G07740 51.0 0.0e+00 1102.8
Bpe13g00300 CCT 993 1307 FH2 protein (formin) Gene Family AT5G07760 74.1 1.1e-124 444.5
Bpe15g00594 CCT 1489 1809 FH2 protein (formin) Gene Family AT5G07760 71.1 2.8e-120 429.9
Bpe14g00599 . 1011 1332 FH2 protein (formin) Gene Family AT5G07760 60.1 4.7e-99 359.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012766 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g01834 Bpe_Chr11 FPKM 37.634518 46.044785 30.840193 29.72389 23.576571 20.439632 25.209059 17.106405 17.815611 21.765642