Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00011 ATGTCCAATTCTGAAGGAGGTAACAACGGCGTCGTCAACGGCGCTGTAATCGACTCTCAGAGACAACACCCACCGAGTAATGGAGCGATTGTCGTCAAAAAGCCGCCCTCAAAAGACCGCCACAGTAAAGTCGACGGTCGCGGTCGTCGTATCCGGATGCCGATCATTTGCGCCGCGCGGGTATTTCAGCTGACCAGGGAGCTTGGCCACAAGTCTGACGGTCAGACCATTGAGTGGCTTCTCCAGCAAGCCGAGCCTTCAATTATAGCTGCGACTGGAACTGGGACTACTCCTGCGAGCTTTTCTTCCGTCTCCGTTTCCGTCAGAGGTGGCGCCGTCTCAGGCTCCTTCTCTTCGTCTTCGACTTCTTCCTCTCTCTCCCTCTCTCGGCCGCAGGCCTTCTCCGGACCCACCCCTTTTATCCTGGGCAAGCGCGTAAGAACCGACGATGACGGAGGCGCTGCAGCTAAAGACGAAGGCGTATCCGTGGGTCCCACGGTGGGCTCCATAGTCGGTCCCGCCGCCGCGGGTGGCTACTGGGCCATTCCTGCTAGACCGGACTTTGGGCAGATATGGAGCTTCGCGGCAGCGACGGGAACGCCGGAATTGGTTCAGCCGTCGTCGGTGGCTCAACAAGCTTCTTTGTTTATTCAGCAGCAGCAGCAGTCGATTGGGGAGGCTTCGGCCGCTAGGGTAGGGAATTACCTTCCAGGACATTTAAATTTACTGGCTTCATTATCAGGTGGACACGGCAATTCAGGTCGGAGAGAAGACGACCAACGTTGA 786 57.12 MSNSEGGNNGVVNGAVIDSQRQHPPSNGAIVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLQQAEPSIIAATGTGTTPASFSSVSVSVRGGAVSGSFSSSSTSSSLSLSRPQAFSGPTPFILGKRVRTDDDGGAAAKDEGVSVGPTVGSIVGPAAAGGYWAIPARPDFGQIWSFAAATGTPELVQPSSVAQQASLFIQQQQQSIGEASAARVGNYLPGHLNLLASLSGGHGNSGRREDDQR 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 139554 140339 + Bpe005250.1 Bpe12g00011 112024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00011 261 MobiDBLite consensus disorder prediction 1 46 - -
Bpe12g00011 261 Pfam TCP family transcription factor 37 120 IPR017887 -
Bpe12g00011 261 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Bpe12g00011 261 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
Bpe12g00011 261 MobiDBLite consensus disorder prediction 1 26 - -
Bpe12g00011 261 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 1 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00011 Bpe-Chr12:139554 Bpe15g00605 Bpe-Chr15:16963063 8.60E-40 dispersed
Bpe12g00011 Bpe-Chr12:139554 Bpe15g00954 Bpe-Chr15:19232675 5.47E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22155 PF03634 TCP 9.30E-33 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00011 K16221 - cpap:110813909 324.709