Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00030 ATGAGTTCTCAAGATCAAAGATCTTCCATGTGTGTTCATGGCGACTCCGGCCTAGTCCTCACCACAGATCCCAAACCCCGTCTCCGATGGACCCTCGAGCTCCATACACGCTTTGTCGAGGCTGTCAAGCAGCTCGGAGGCCCTGATAAAGCAACCCCAAAGACCATCATGAGGGTTATGGGTGTGAAGGGTCTAACTCTTTTCCATCTCAAAAGCCACCTTCAGAAATTTAGGCTTGGGAAACTACCTCATAAAGAATTCACCGATCACTCGGTTGAGCATGGATTTATGGAACCTTCCTCCTTAGAACTTCGGCGAAACACGGTGTCTTCGTCCAACATGGTTGGCCGCGACACGAACGACGACTCGCACATGGTCGATGTGATTAAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAGCTAGAGGTGCAAAGGCAGCTTCAACTGAAAATCGAGGCTCAAGGGAAGTACACGCAAAGCATGCTAGAGAAGGCTTGTCAAACCCTAGTCAGTGAAAATGTGGGTTGGGGAGGATCATCCTTCAAGTCAACGGTTCCATGTTTTGAAGACCTTAACATATGGGGAGAAGACCGGCTTGATCTCGAGGAACCAATGGATGGTTTTCTGCCTATTGACGACGACATTTGTCTTGGAAAGACGGAGAGTAGCTCGTGTAGCTATGGCGGAGGGAGCCATCTTCTCTGTTCAGAAGGTCTCCAGCTTCATGTGTTAGGAATGGCGGCAGCTTCTGGCGCTCTTCAAGGAGAGAGAATTGTGGATATATTCTAG 795 49.18 MSSQDQRSSMCVHGDSGLVLTTDPKPRLRWTLELHTRFVEAVKQLGGPDKATPKTIMRVMGVKGLTLFHLKSHLQKFRLGKLPHKEFTDHSVEHGFMEPSSLELRRNTVSSSNMVGRDTNDDSHMVDVIKMQMEVQRRLHEQLEVQRQLQLKIEAQGKYTQSMLEKACQTLVSENVGWGGSSFKSTVPCFEDLNIWGEDRLDLEEPMDGFLPIDDDICLGKTESSSCSYGGGSHLLCSEGLQLHVLGMAAASGALQGERIVDIF 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 272030 273296 - Bpe005269.1 Bpe12g00030 112043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00030 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 82 IPR017930 -
Bpe12g00030 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 178 IPR044848 GO:0003700
Bpe12g00030 264 Pfam Myb-like DNA-binding domain 28 76 IPR001005 -
Bpe12g00030 264 Pfam MYB-CC type transfactor, LHEQLE motif 127 170 IPR025756 -
Bpe12g00030 264 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 178 - -
Bpe12g00030 264 SUPERFAMILY Homeodomain-like 24 79 IPR009057 -
Bpe12g00030 264 Gene3D - 24 82 - -
Bpe12g00030 264 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 25 80 IPR006447 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe07g00477 Bpe-Chr7:8171923 Bpe12g00030 Bpe-Chr12:272030 7.55E-88 dispersed
Bpe12g00030 Bpe-Chr12:272030 Bpe13g00855 Bpe-Chr13:14754415 3.93E-66 dispersed
Bpe12g00030 Bpe-Chr12:272030 Bpe15g00926 Bpe-Chr15:19025279 1.83E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22158 PF00249 Myb_DNA-binding 1.50E-06 CL0123 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00030 - - ccaj:109805894 305.449