Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00039 ATGGATCAATCAGAGCCGGCTCATCTTCAACAACATCAACAACAATCTCAGCAGCCTGTCATGGGAGTAATTGCAGGTGCAGGTCATTATGCAGCTAATCCTTACCCAAGTGCTGCCATGGTGGCTTCTGGAACTCCTCCAGATCAACCTCCAGCCTCTTTTTCAAATTCACCTCACCAGCTTGCATACCAGCAAGCCCAAAATTTTTATCACCAACAGCAGCAGCAACAACAACAGCAGCTGCAAATGTTCTGGGCTAACCAAATGCAAGAAATTGAGCAGAATACAGACTTCAAAAATCACAGCCTTCCTCTTGCTAGGATAAAGAAAGTAATGAAAGCCGATGAGGATGTCAGAATGATATCGGCAGAAGCCCCAGTGATATTTGCAAAAGCGTGCGAAATGTTCATCCTTGAGCTGACCTTGCGCTCTTGGATCCATACAGAAGAGAACAAGAGAAGAACTCTGCAGAAAAACGATATTGCAGCTGCCATTTCAAGGACAGACGTCTTCGATTTCTTGGTCGACATCATTCCCAGGGATGAGTTGAAAGAGGAGGGATTGGGAGTGACCAAGGCTGCTCTTCCTGTCGTTGGCTCGCCGGCTGATATACCTTATTACTATGTCCCGCCACATCCAGTTGGGCCCGCAATGTATGCAGCTCAACAGCCACGGCCACCTATTGCTTTTATGCCGTGGCCCCACAGCCAGCCTCAGCCGGACCAGAACAATGCGTAG 738 48.24 MDQSEPAHLQQHQQQSQQPVMGVIAGAGHYAANPYPSAAMVASGTPPDQPPASFSNSPHQLAYQQAQNFYHQQQQQQQQQLQMFWANQMQEIEQNTDFKNHSLPLARIKKVMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKAALPVVGSPADIPYYYVPPHPVGPAMYAAQQPRPPIAFMPWPHSQPQPDQNNA 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 321227 321964 - Bpe005278.2 Bpe12g00039 112052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00039 245 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 12 213 - -
Bpe12g00039 245 Pfam Core histone H2A/H2B/H3/H4 64 165 IPR007125 GO:0003677
Bpe12g00039 245 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 12 213 - -
Bpe12g00039 245 Gene3D Histone, subunit A 63 180 IPR009072 GO:0046982
Bpe12g00039 245 SUPERFAMILY Histone-fold 60 174 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00039 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - pop:7492093 348.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00039 Bpe-Chr12:321227 Bpe15g00222 Bpe-Chr15:13346986 3.50E-64 dispersed
Bpe05g00636 Bpe-Chr5:20211021 Bpe12g00039 Bpe-Chr12:321227 3.71E-30 transposed
Bpe11g01366 Bpe-Chr11:10229589 Bpe12g00039 Bpe-Chr12:321227 2.37E-69 transposed
Bpe12g00039 Bpe-Chr12:321227 Bpe15g00914 Bpe-Chr15:18944838 2.39E-122 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe15g00222 BCT,CCT,ECH 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 76.4 7.8e-73 270.4
Bpe13g00200 BCT,CCT,ECH 56 240 CCAAT-HAP5 Transcription Factor Family AT3G48590 75.9 8.6e-72 266.9
Bpe15g00914 . 72 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 67.1 1.6e-54 209.5
Bpe12g00039 . 81 216 CCAAT-HAP5 Transcription Factor Family AT3G48590 70.8 1.9e-50 196.1
Bpe11g01366 . 71 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.9 2.1e-49 192.6
Bpe11g01366 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 77.5 4.0e-53 204.9
Bpe15g00914 . 52 245 CCAAT-HAP5 Transcription Factor Family AT1G08970 57.3 2.9e-48 188.7
Bpe12g00039 . 25 179 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 1.9e-47 186.0
Bpe13g00200 BCT,CCT,ECH 56 154 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.0e-41 166.0
Bpe15g00222 BCT,CCT,ECH 35 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.0e-41 166.0
Bpe15g00914 . 56 247 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.3 1.2e-54 209.9
Bpe11g01366 . 23 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.0 8.3e-53 203.8
Bpe12g00039 . 27 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.5 2.1e-51 199.1
Bpe15g00222 BCT,CCT,ECH 35 172 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.5 1.2e-48 189.9
Bpe13g00200 BCT,CCT,ECH 56 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 68.6 6.2e-48 187.6
Bpe15g00222 BCT,CCT,ECH 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.6 4.9e-65 244.6
Bpe13g00200 BCT,CCT,ECH 56 240 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.1 1.9e-64 242.7
Bpe15g00914 . 72 227 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.0 8.1e-52 200.7
Bpe12g00039 . 81 210 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.7 3.5e-47 185.3
Bpe11g01366 . 71 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 2.1e-44 176.0
Bpe12g00039 . 46 209 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.2 8.1e-63 236.9
Bpe15g00914 . 50 198 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.5 5.8e-61 230.7
Bpe15g00222 BCT,CCT,ECH 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.4 3.0e-49 191.8
Bpe11g01366 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.0 1.1e-48 189.9
Bpe13g00200 BCT,CCT,ECH 56 179 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.2 3.3e-48 188.3
Bpe04g01628 . 1 277 CCAAT-HAP5 Transcription Factor Family AT3G12480 55.0 7.5e-65 244.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22159 PF00125 Histone 1.40E-18 CL0012 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00039 Bpe_Chr12 FPKM 15.18892 15.382796 20.568916 20.974749 30.984581 33.788532 35.654446 11.520679 11.485306 11.246922