Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00039 ATGGATCAATCAGAGCCGGCTCATCTTCAACAACATCAACAACAATCTCAGCAGCCTGTCATGGGAGTAATTGCAGGTGCAGGTCATTATGCAGCTAATCCTTACCCAAGTGCTGCCATGGTGGCTTCTGGAACTCCTCCAGATCAACCTCCAGCCTCTTTTTCAAATTCACCTCACCAGCTTGCATACCAGCAAGCCCAAAATTTTTATCACCAACAGCAGCAGCAACAACAACAGCAGCTGCAAATGTTCTGGGCTAACCAAATGCAAGAAATTGAGCAGAATACAGACTTCAAAAATCACAGCCTTCCTCTTGCTAGGATAAAGAAAGTAATGAAAGCCGATGAGGATGTCAGAATGATATCGGCAGAAGCCCCAGTGATATTTGCAAAAGCGTGCGAAATGTTCATCCTTGAGCTGACCTTGCGCTCTTGGATCCATACAGAAGAGAACAAGAGAAGAACTCTGCAGAAAAACGATATTGCAGCTGCCATTTCAAGGACAGACGTCTTCGATTTCTTGGTCGACATCATTCCCAGGGATGAGTTGAAAGAGGAGGGATTGGGAGTGACCAAGGCTGCTCTTCCTGTCGTTGGCTCGCCGGCTGATATACCTTATTACTATGTCCCGCCACATCCAGTTGGGCCCGCAATGTATGCAGCTCAACAGCCACGGCCACCTATTGCTTTTATGCCGTGGCCCCACAGCCAGCCTCAGCCGGACCAGAACAATGCGTAG 738 48.24 MDQSEPAHLQQHQQQSQQPVMGVIAGAGHYAANPYPSAAMVASGTPPDQPPASFSNSPHQLAYQQAQNFYHQQQQQQQQQLQMFWANQMQEIEQNTDFKNHSLPLARIKKVMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKAALPVVGSPADIPYYYVPPHPVGPAMYAAQQPRPPIAFMPWPHSQPQPDQNNA 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 321227 321964 - Bpe005278.2 Bpe12g00039 112052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00039 245 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 12 213 - -
Bpe12g00039 245 Pfam Core histone H2A/H2B/H3/H4 64 165 IPR007125 GO:0003677
Bpe12g00039 245 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 12 213 - -
Bpe12g00039 245 Gene3D Histone, subunit A 63 180 IPR009072 GO:0046982
Bpe12g00039 245 SUPERFAMILY Histone-fold 60 174 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe12g00039 Bpe-Chr12:321227 Bpe15g00222 Bpe-Chr15:13346986 3.50E-64 dispersed
Bpe05g00636 Bpe-Chr5:20211021 Bpe12g00039 Bpe-Chr12:321227 3.71E-30 transposed
Bpe11g01366 Bpe-Chr11:10229589 Bpe12g00039 Bpe-Chr12:321227 2.37E-69 transposed
Bpe12g00039 Bpe-Chr12:321227 Bpe15g00914 Bpe-Chr15:18944838 2.39E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22159 PF00125 Histone 1.40E-18 CL0012 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00039 K08066 - pop:7492093 348.977