Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00048 ATGGTTTTGCTTAATAAGCCAATCTTTCAGACCTCCATTGCTATCCTTCTTCTTCTTCTTCTTCTTCCAAACTTCTTCTGTGTATTGGCTGGCACTAAAGAAATCGAGTCTTTATCGTCCTCATTGCCACTACCTCCGTTAGACCTAGAAATCTTGAACTTCTTAGACATAAGAGTAACTCTGGTTTTTCCCATAATTCAAGCCTTTAAACTCACCATCACGACAGACCCATTCGGAATCACCAGAACTTGGGTCGGCTCCGACGTCTGCAGCTACAGAGGATTCCTCTGCGACAAGCCACCAGACAACCGCTCTGCAACTGCCGTGGCTTCGGTGGATTTCAATGGCTTCCAGCTCGCTGCTCCTACTCTCGACGGGTTTATAGATAAACTTCCTGACCTTGCTGTTTTCCACGCGAACTCTAACCAGTTTTCCGGGGAAGTTTCTCCAAGGATATCAGAGTTGCCATTTCTCTACGAGCTTGATTTAAGCAACAATCTCTTTTCTGGGATTTTTCCGATTTCCGTTCTACGTATGAACAGCTTGTCATTTTTGGATATTCGATTCAATTTCTTTACTGGATCTGTTCCTCCACAAATTTTTGCGAAATCCCTGGACTTTCTTTTCCTCAACAACAACAACTTCGACCTAACACTGCCTGAAAATCTCGGCTCAACGCCAGCTTCTTATCTAAGTTTAGCCAACAATGGCTTCACTGGTCCCATCCCAAGAACCATAGGAAACGCTTCGTCCACTTTAGTCGAAGTATTATTCTTAAACAACTTATTAACCGGTTGTCTTCCTTCCGAAATAGGGTTTCTCGACAACGCCATAGTTTTCGACGCCGGAAACAACTTGTTGGCTGGTCCGCTTCCTAGCTCACTCGGTTGTATGTACAAAATCGAGCAGATGAACTTCGCCGGAAACTCATTATCCGGAAAAGTACCGGAGACGGTTTGCCAACTCGGAAACTTGCAGAATCTTTCACTTTCAGATAATTATTTTACCTCCGTAGGGAGATACTGCAAGAAATTGATCAAAAGTGGAGTTCTTGATTTGAGGAGAAACTGTATTCCCGATCTACCGGATCAGAGACCGGCAAAGGAATGTGCGATCTTCTTCTTGACTCCAAAAACTTGTCCAACCCAAGAAGTTTCGGACATAAACCAGTGTAAGAGCGTCTCTGCGCAGGAACATCAATCAAAAAGACCCATGAGAAAACTGGTGACCTACGCTGCTCTTTCTGCTCGTAGATTATAA 1260 44.05 MVLLNKPIFQTSIAILLLLLLLPNFFCVLAGTKEIESLSSSLPLPPLDLEILNFLDIRVTLVFPIIQAFKLTITTDPFGITRTWVGSDVCSYRGFLCDKPPDNRSATAVASVDFNGFQLAAPTLDGFIDKLPDLAVFHANSNQFSGEVSPRISELPFLYELDLSNNLFSGIFPISVLRMNSLSFLDIRFNFFTGSVPPQIFAKSLDFLFLNNNNFDLTLPENLGSTPASYLSLANNGFTGPIPRTIGNASSTLVEVLFLNNLLTGCLPSEIGFLDNAIVFDAGNNLLAGPLPSSLGCMYKIEQMNFAGNSLSGKVPETVCQLGNLQNLSLSDNYFTSVGRYCKKLIKSGVLDLRRNCIPDLPDQRPAKECAIFFLTPKTCPTQEVSDINQCKSVSAQEHQSKRPMRKLVTYAALSARRL 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 386704 387963 + Bpe005287.1 Bpe12g00048 112061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00048 419 Gene3D Ribonuclease Inhibitor 229 367 IPR032675 -
Bpe12g00048 419 Gene3D Ribonuclease Inhibitor 65 228 IPR032675 -
Bpe12g00048 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 416 - -
Bpe12g00048 419 PANTHER SCOPOLETIN GLUCOSYLTRANSFERASE 11 416 - -
Bpe12g00048 419 SUPERFAMILY L domain-like 72 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00048 - - - cpap:110806697 495.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01792 Bpe-Chr2:20183940 Bpe12g00048 Bpe-Chr12:386704 4.37E-106 dispersed
Bpe08g00506 Bpe-Chr8:3354068 Bpe12g00048 Bpe-Chr12:386704 3.45E-84 dispersed
Bpe08g00595 Bpe-Chr8:4306895 Bpe12g00048 Bpe-Chr12:386704 3.66E-61 dispersed
Bpe12g00048 Bpe-Chr12:386704 Bpe03g00294 Bpe-Chr3:3991704 3.06E-13 dispersed
Bpe15g00907 Bpe-Chr15:18911618 Bpe12g00048 Bpe-Chr12:386704 4.17E-23 dispersed
Bpe12g00047 Bpe-Chr12:383664 Bpe12g00048 Bpe-Chr12:386704 2.10E-66 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g379 . . . . . Bpe12g00048 . . Cmo19g00609 . . . . . . . Cpe15g00478 . . . . . . . Cla02g00622 Cam02g0651 Cec02g0652 Cco02g0680 Clacu02g0659 Cmu02g0654 Cre02g0973 Cone12ag1078 Cone8ag1116 Cone3ag0989 Cone10ag1007 . Csa07g00737 . Cme01g00071 Blo04g00475 . . . . . . Bma08g00811 . . . Cma11g01736 Cma19g00589 . . Cpe14g00287 Cpe01g00429 . . . . . . . . . . . . . . . . Chy01g00077 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003062 1 2 0 1 1 1 2 2 2 2 2 1 1 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00048 Bpe_Chr12 FPKM 1.109589 1.470118 0.280661 0.523423 0.328416 0.25828 0.596112 0.215481 0.268298 0.091968