Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00051 ATGGATTCAGCCTCCTCTAAACTCCATTTCTTCTTCTTCCCTTACCTCATGGGGGGACACTTGATACCCATGATAGACGTTGCCAGAGTCTTCTCTTCCCACGGAGTCAAATCCACCATTGTCACCACCCCTCAGAACGCCGGGCTCTACCAAAACACTGTCAACAGAGACCAACAGGCTGGGAAAGAAATCAGTTTCCGCACCATTAAATTGCCTCCCTCCGATCTCCCTGACGGCTGCGAAAACCAAATCTCCATCACCGCCGTTGAGATGTCCCAGGCGCTTTTTAATGCCGCTATGAATCTCCGGCAACCCTTTGAGCTTCTTCTCCGGGAAGTTAGACCGGATTGTATTGTCACTGACATGTTCTATACATGGACAGCAGATATGGCCATGGAACTTGGGATTCCCAGAATCATCTTCCATGGCACTAGTTGCTTCCCTCAATGTGTTGAACACAGTATTAGGCTGCATTGTTCCCACGAAAAGGTAAGTTCCGATTTTGAGCCTTTTACCGTACCGGAAATGCCGGATGAAATCGAGCTGACGAGGTCGATGTTGCCGGATTCCATGAAAGTCGTAAATGAAATAACAAAATTTTTCTACGACATATTGGAGTCAGAGCTGAAAAGCTATGGAGTTTTCATCAATAGCTTCTACGAGTTGGAACAAAAATACCTAGACTATTATGAGAAAAAGATGGGGAAGAGAGTATGGCATATTGGTCCGGTATCTTTCTGCAACCAAAAAATGGATGCAGTTGAAAGAGGGAGTGAAACCTCCATTGACGAACGTAGTTGCCTGAGCTGGCTCGACAGCAAAGAACCAAACTCCGTTCTTTACATCAGCTTCGGAAGCTCCCCTCGAATTGCACCCGAGCAGACCCGGGAGATCGCTTATGGTCTTGAAGCCTGCGACTGTCCATTCATCTGGGTGATCGGGAAAATTCTGAAATCCGACGGAGGGAAGCCATTGGAGGCGGAAGAGCTTCTGCCTCAAGGATTTGAAGAGAGAATAAAAGAATCAAAGAGAGGGCTGATAATAAAAGGCTGGGCTCCCCAGTTACTCATTTTACAGCACGAGTCGGTCGGTGGTTTCATGAGCCACTGCGGCTGGAACTCCGTGATGGAGACGGTGAGCTGCGGAGTGCCGTTTATTACCTGGCCGATCACCTCCGAACAATTCTACAACGAGAAGTTCATAACCAACGTGCTGAAGACGGGATATTCAGTGGGAAATATGGAGTGGATATCGTGGCTCGACGAACCAAAACTGACTGTGGGAAGAGAGATGGTGACGACGGCGGTGGAGCGTCTGATGGGCGGGGAAGAAAAAGATGAGGTGGTGGAAATTCGGCGGCGATCGAAAGAGCTGGCGGAGAAGGCAACGAGAGCCGTTGAAAGAGGTGGCTCTTCCTACCAAAACGTCCACGCATTTATCGAAGAAATCAAGGCTCTTCAGAAATAG 1467 48.53 MDSASSKLHFFFFPYLMGGHLIPMIDVARVFSSHGVKSTIVTTPQNAGLYQNTVNRDQQAGKEISFRTIKLPPSDLPDGCENQISITAVEMSQALFNAAMNLRQPFELLLREVRPDCIVTDMFYTWTADMAMELGIPRIIFHGTSCFPQCVEHSIRLHCSHEKVSSDFEPFTVPEMPDEIELTRSMLPDSMKVVNEITKFFYDILESELKSYGVFINSFYELEQKYLDYYEKKMGKRVWHIGPVSFCNQKMDAVERGSETSIDERSCLSWLDSKEPNSVLYISFGSSPRIAPEQTREIAYGLEACDCPFIWVIGKILKSDGGKPLEAEELLPQGFEERIKESKRGLIIKGWAPQLLILQHESVGGFMSHCGWNSVMETVSCGVPFITWPITSEQFYNEKFITNVLKTGYSVGNMEWISWLDEPKLTVGREMVTTAVERLMGGEEKDEVVEIRRRSKELAEKATRAVERGGSSYQNVHAFIEEIKALQK 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 403455 404921 - Bpe005290.1 Bpe12g00051 112064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00051 488 Gene3D Glycogen Phosphorylase B; 12 476 - -
Bpe12g00051 488 PANTHER UDP-GLUCOSYLTRANSFERASE 73B2 4 486 - -
Bpe12g00051 488 CDD GT1_Gtf-like 8 468 IPR002213 GO:0008194
Bpe12g00051 488 PANTHER GLYCOSYLTRANSFERASE 4 486 - -
Bpe12g00051 488 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 483 - -
Bpe12g00051 488 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 271 402 IPR002213 GO:0008194
Bpe12g00051 488 Gene3D Glycogen Phosphorylase B; 252 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00051 K14595 AOG; abscisate beta-glucosyltransferase [EC:2.4.1.263] - zju:107427027 582.793
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe12g00051 Bpe15g00905 CCT
Bpe12g00051 Bpe15g00905 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00654 Bpe-Chr2:4296685 Bpe12g00051 Bpe-Chr12:403455 1.78E-57 dispersed
Bpe12g00051 Bpe-Chr12:403455 Bpe15g00905 Bpe-Chr15:18906279 5.16E-142 dispersed
Bpe12g00050 Bpe-Chr12:392711 Bpe12g00051 Bpe-Chr12:403455 8.35E-169 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g381 . . . . . Bpe12g00051 . . Cmo19g00611 . . . . . . . . Bhi05g01080 . . . . . . Cla02g00617 . . . . . . . Cone8ag1119 . . Lsi10g00520 Csa07g00741 . Cme01g00064 Blo04g00477 Blo13g00583 Bda15g00041 . Bpe15g00905 . . Bma08g00809 . . . . Cma19g00593 . . . . . . . . . . . . . . . . . . . . Chy01g00069 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000030 8 18 6 6 7 16 1 17 9 18 10 14 10 15 18 12 16 19 2 13 14 14 11 16 7 17 19 18 10 3 364
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe12g00051 Bpe_Chr12 FPKM 8.445477 8.947828 2.841007 2.876052 5.688483 4.626795 4.99851 0.489213 0.547241 0.547734