Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe12g00052 ATGGCTCAGATTCAACCTCCGCCTCAAAATGTGATGCCCGGCGTCAATCAAGCTGCGAACCAGTTTGTGACAACCTCGATGTATGTCGGAGATCTTGACCCGAATGTGACGGATTCGCAGCTATATGACCTGTTCAATCAGGTCGGTCAGGTGGTGTCTGTTCGAGTCTGCAGGGATTTGTCTACTCGACGATCGCTCGGCTACGGTTACGTCAACTATAGCAACCCGCAAGATGGTGCAAGAGCATTGGACGTTCTGAACTTTACACCTATAAATGGGAAGCCCATCCGAGTAATGTATTCTCATCGTGACCCCAGTATCCGAAAAAGTGGTGCTGGAAATATCTTTATCAAGAATTTGGACAAGGCGATTGATCACAAAGCATTACAGGAGACATTTTCTGCATTTGGGAATGTAGTCTCCTGTAAGGTGGCCACAGACCAATCTGGTCAGTCAAAAGGCTATGGATTTGTTCAATTTGATAATGAGGAATCTGCTCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGACAAACAAGTCTTTGTTGGACCTTTCCTTCGTAAACAGGAAAGAGATGGTTCTGTTGACAAGTCTAAATTCAACAATGTATATCTAAAAAATATCTCTGATGGTACCACTGAAGAAGACCTGCAAAAGATATTTGGTGAATTCGGGCCCATCACTAGTGTTGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGCTATGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAGTTGAATTAAAAAGTCAATTTGAACGTAATATGAAAGAGGCAGCTGACAAATATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGACAGTATCAACGATGATATGCTTAAGGAGTTGTTCTCTCCATTTGGCACAATTACTTCTTGCAAGGTGATGCAAGACCCTAATGGAATAAGTAGGGGATCTGGGTTTGTGGCATTCTCTTCTCCTGAAGAGGCTTCTAGAGCTCTGTTGGAGATGAATGGAAAAATGATTGTGTCGAAACCTCTGTATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAGGCTTAGGTTGCAGGCACAATTTTCTCAGATGCAACCAGTAGCAATGCCACACTCTGTTGCTCCCCGAATGCCAATGTATCCACCCAGTGGTCCTGGTCTTGCCCAACAAATATTCTATAATCAGGCTCCGCCAGCTATAATATCTTCACAGGCTGGCTACGGTTATCAGCAACAAATTGTTCCTGGTATTAGGCCTGGTGGGGCTTCGATGCCAAACTTTTTTGTGCCAATGGTTCAACAGGGCCCACAAGGACAACGCCCTGGTGGAAGACGATCTGGGGGCCTTCAGCAAACCCAGCAGCCTGTTCCGCTAATGCACCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTACCCTCCTGGACGGGGCCTGCCTGATGTTCCTATGCCTGGCATTGCTGGAGGCATGTTTTCTGTTCCATATGACATGAGTGGCATGCCACTGCGTGATGCAGCTATCTCTCAGCCTATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTTCACCAGATCAGCAGAGAACAATGCTAGGGGAGAGTCTTTACCCACTTGTGGAGCAGCTTGAGCCTGAGAATGCTGCCAAAGTGACTGGCATGCTTCTCGAAATGGATCAGACGGAGGTTCTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCAAAAGTGGCAGAGGCTATGGAGGTTCTAAGAAATGTTGCCCAGCAGCAGGTTGGAAATGCAGCTGATCAGTTGGTCTCGTTGTCTCTCAATGACAACCTTGATTCCTGA 1938 45.61 MAQIQPPPQNVMPGVNQAANQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDGARALDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVVSCKVATDQSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVFVGPFLRKQERDGSVDKSKFNNVYLKNISDGTTEEDLQKIFGEFGPITSVAVMRDEDGKSKCFGFVNFENPDDAAMSVEALNGKKFDGKEWYVGKAQKKSEREVELKSQFERNMKEAADKYQGANLYVKNLDDSINDDMLKELFSPFGTITSCKVMQDPNGISRGSGFVAFSSPEEASRALLEMNGKMIVSKPLYVAPAQRKEERRLRLQAQFSQMQPVAMPHSVAPRMPMYPPSGPGLAQQIFYNQAPPAIISSQAGYGYQQQIVPGIRPGGASMPNFFVPMVQQGPQGQRPGGRRSGGLQQTQQPVPLMHQQMVPRGRVYRYPPGRGLPDVPMPGIAGGMFSVPYDMSGMPLRDAAISQPIPIGALASALANASPDQQRTMLGESLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQVGNAADQLVSLSLNDNLDS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 406231 410662 + Bpe005291.1 Bpe12g00052 112065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe12g00052 645 Gene3D - 1 113 IPR012677 -
Bpe12g00052 645 Gene3D - 190 289 IPR012677 -
Bpe12g00052 645 Gene3D - 290 395 IPR012677 -
Bpe12g00052 645 Gene3D - 114 186 IPR012677 -
Bpe12g00052 645 CDD RRM1_I_PABPs 26 105 - -
Bpe12g00052 645 Pfam Poly-adenylate binding protein, unique domain 555 619 IPR002004 GO:0003723
Bpe12g00052 645 SMART rrm2_1 308 380 IPR003954 GO:0003676
Bpe12g00052 645 SMART rrm2_1 114 186 IPR003954 GO:0003676
Bpe12g00052 645 SMART rrm2_1 205 277 IPR003954 GO:0003676
Bpe12g00052 645 SMART rrm2_1 26 99 IPR003954 GO:0003676
Bpe12g00052 645 PANTHER RNA BINDING PROTEIN 14 629 - -
Bpe12g00052 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 281 IPR000504 GO:0003723
Bpe12g00052 645 CDD RRM3_I_PABPs 203 282 - -
Bpe12g00052 645 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 547 624 IPR002004 GO:0003723
Bpe12g00052 645 SMART rrm1_1 114 186 IPR000504 GO:0003723
Bpe12g00052 645 SMART rrm1_1 308 380 IPR000504 GO:0003723
Bpe12g00052 645 SMART rrm1_1 26 99 IPR000504 GO:0003723
Bpe12g00052 645 SMART rrm1_1 205 277 IPR000504 GO:0003723
Bpe12g00052 645 MobiDBLite consensus disorder prediction 469 488 - -
Bpe12g00052 645 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 26 620 IPR006515 GO:0003723
Bpe12g00052 645 CDD RRM4_I_PABPs 306 384 - -
Bpe12g00052 645 Gene3D - 543 626 - -
Bpe12g00052 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Bpe12g00052 645 CDD RRM2_I_PABPs 111 187 IPR045305 -
Bpe12g00052 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Bpe12g00052 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 274 IPR000504 GO:0003723
Bpe12g00052 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Bpe12g00052 645 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 182 IPR000504 GO:0003723
Bpe12g00052 645 SUPERFAMILY PABC (PABP) domain 488 637 IPR036053 GO:0003723
Bpe12g00052 645 SUPERFAMILY RNA-binding domain, RBD 204 386 IPR035979 GO:0003676
Bpe12g00052 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 185 IPR000504 GO:0003723
Bpe12g00052 645 SMART poly_2 559 622 IPR002004 GO:0003723
Bpe12g00052 645 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Bpe12g00052 645 PANTHER POLYADENYLATE-BINDING PROTEIN 14 629 - -
Bpe12g00052 645 SUPERFAMILY RNA-binding domain, RBD 25 194 IPR035979 GO:0003676
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe12g00052 Bpe15g00903 CCT
Bpe12g00052 Bpe15g00903 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00877 Bpe-Chr3:28518064 Bpe12g00052 Bpe-Chr12:406231 1.54E-06 dispersed
Bpe03g01262 Bpe-Chr3:31206619 Bpe12g00052 Bpe-Chr12:406231 1.65E-19 dispersed
Bpe09g00282 Bpe-Chr9:2185705 Bpe12g00052 Bpe-Chr12:406231 1.38E-06 dispersed
Bpe11g00546 Bpe-Chr11:4185893 Bpe12g00052 Bpe-Chr12:406231 9.10E-12 dispersed
Bpe02g00197 Bpe-Chr2:1375476 Bpe12g00052 Bpe-Chr12:406231 0 transposed
Bpe02g01797 Bpe-Chr2:20227109 Bpe12g00052 Bpe-Chr12:406231 0 transposed
Bpe05g00295 Bpe-Chr5:16216596 Bpe12g00052 Bpe-Chr12:406231 1.04E-07 transposed
Bpe05g01075 Bpe-Chr5:23258859 Bpe12g00052 Bpe-Chr12:406231 8.10E-07 transposed
Bpe12g00052 Bpe-Chr12:406231 Bpe15g00903 Bpe-Chr15:18896488 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe12g00052 K13126 - jre:108988866 1069.68