Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe12g00052 | ATGGCTCAGATTCAACCTCCGCCTCAAAATGTGATGCCCGGCGTCAATCAAGCTGCGAACCAGTTTGTGACAACCTCGATGTATGTCGGAGATCTTGACCCGAATGTGACGGATTCGCAGCTATATGACCTGTTCAATCAGGTCGGTCAGGTGGTGTCTGTTCGAGTCTGCAGGGATTTGTCTACTCGACGATCGCTCGGCTACGGTTACGTCAACTATAGCAACCCGCAAGATGGTGCAAGAGCATTGGACGTTCTGAACTTTACACCTATAAATGGGAAGCCCATCCGAGTAATGTATTCTCATCGTGACCCCAGTATCCGAAAAAGTGGTGCTGGAAATATCTTTATCAAGAATTTGGACAAGGCGATTGATCACAAAGCATTACAGGAGACATTTTCTGCATTTGGGAATGTAGTCTCCTGTAAGGTGGCCACAGACCAATCTGGTCAGTCAAAAGGCTATGGATTTGTTCAATTTGATAATGAGGAATCTGCTCAAAAAGCTATTGAGAAGTTGAATGGAATGCTATTGAATGACAAACAAGTCTTTGTTGGACCTTTCCTTCGTAAACAGGAAAGAGATGGTTCTGTTGACAAGTCTAAATTCAACAATGTATATCTAAAAAATATCTCTGATGGTACCACTGAAGAAGACCTGCAAAAGATATTTGGTGAATTCGGGCCCATCACTAGTGTTGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGCTATGTCTGTTGAGGCACTTAATGGAAAGAAGTTTGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAGTTGAATTAAAAAGTCAATTTGAACGTAATATGAAAGAGGCAGCTGACAAATATCAGGGAGCAAACTTATATGTTAAAAATTTAGATGACAGTATCAACGATGATATGCTTAAGGAGTTGTTCTCTCCATTTGGCACAATTACTTCTTGCAAGGTGATGCAAGACCCTAATGGAATAAGTAGGGGATCTGGGTTTGTGGCATTCTCTTCTCCTGAAGAGGCTTCTAGAGCTCTGTTGGAGATGAATGGAAAAATGATTGTGTCGAAACCTCTGTATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAGGCTTAGGTTGCAGGCACAATTTTCTCAGATGCAACCAGTAGCAATGCCACACTCTGTTGCTCCCCGAATGCCAATGTATCCACCCAGTGGTCCTGGTCTTGCCCAACAAATATTCTATAATCAGGCTCCGCCAGCTATAATATCTTCACAGGCTGGCTACGGTTATCAGCAACAAATTGTTCCTGGTATTAGGCCTGGTGGGGCTTCGATGCCAAACTTTTTTGTGCCAATGGTTCAACAGGGCCCACAAGGACAACGCCCTGGTGGAAGACGATCTGGGGGCCTTCAGCAAACCCAGCAGCCTGTTCCGCTAATGCACCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTACCCTCCTGGACGGGGCCTGCCTGATGTTCCTATGCCTGGCATTGCTGGAGGCATGTTTTCTGTTCCATATGACATGAGTGGCATGCCACTGCGTGATGCAGCTATCTCTCAGCCTATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTTCACCAGATCAGCAGAGAACAATGCTAGGGGAGAGTCTTTACCCACTTGTGGAGCAGCTTGAGCCTGAGAATGCTGCCAAAGTGACTGGCATGCTTCTCGAAATGGATCAGACGGAGGTTCTACATTTGCTGGAGTCACCAGAAGCTCTGAAAGCAAAAGTGGCAGAGGCTATGGAGGTTCTAAGAAATGTTGCCCAGCAGCAGGTTGGAAATGCAGCTGATCAGTTGGTCTCGTTGTCTCTCAATGACAACCTTGATTCCTGA | 1938 | 45.61 | MAQIQPPPQNVMPGVNQAANQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDGARALDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVVSCKVATDQSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVFVGPFLRKQERDGSVDKSKFNNVYLKNISDGTTEEDLQKIFGEFGPITSVAVMRDEDGKSKCFGFVNFENPDDAAMSVEALNGKKFDGKEWYVGKAQKKSEREVELKSQFERNMKEAADKYQGANLYVKNLDDSINDDMLKELFSPFGTITSCKVMQDPNGISRGSGFVAFSSPEEASRALLEMNGKMIVSKPLYVAPAQRKEERRLRLQAQFSQMQPVAMPHSVAPRMPMYPPSGPGLAQQIFYNQAPPAIISSQAGYGYQQQIVPGIRPGGASMPNFFVPMVQQGPQGQRPGGRRSGGLQQTQQPVPLMHQQMVPRGRVYRYPPGRGLPDVPMPGIAGGMFSVPYDMSGMPLRDAAISQPIPIGALASALANASPDQQRTMLGESLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQVGNAADQLVSLSLNDNLDS | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 406231 | 410662 | + | Bpe005291.1 | Bpe12g00052 | 112065 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe12g00052 | 645 | Gene3D | - | 1 | 113 | IPR012677 | - | |
Bpe12g00052 | 645 | Gene3D | - | 190 | 289 | IPR012677 | - | |
Bpe12g00052 | 645 | Gene3D | - | 290 | 395 | IPR012677 | - | |
Bpe12g00052 | 645 | Gene3D | - | 114 | 186 | IPR012677 | - | |
Bpe12g00052 | 645 | CDD | RRM1_I_PABPs | 26 | 105 | - | - | |
Bpe12g00052 | 645 | Pfam | Poly-adenylate binding protein, unique domain | 555 | 619 | IPR002004 | GO:0003723 | |
Bpe12g00052 | 645 | SMART | rrm2_1 | 308 | 380 | IPR003954 | GO:0003676 | |
Bpe12g00052 | 645 | SMART | rrm2_1 | 114 | 186 | IPR003954 | GO:0003676 | |
Bpe12g00052 | 645 | SMART | rrm2_1 | 205 | 277 | IPR003954 | GO:0003676 | |
Bpe12g00052 | 645 | SMART | rrm2_1 | 26 | 99 | IPR003954 | GO:0003676 | |
Bpe12g00052 | 645 | PANTHER | RNA BINDING PROTEIN | 14 | 629 | - | - | |
Bpe12g00052 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 204 | 281 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | CDD | RRM3_I_PABPs | 203 | 282 | - | - | |
Bpe12g00052 | 645 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 547 | 624 | IPR002004 | GO:0003723 | |
Bpe12g00052 | 645 | SMART | rrm1_1 | 114 | 186 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | SMART | rrm1_1 | 308 | 380 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | SMART | rrm1_1 | 26 | 99 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | SMART | rrm1_1 | 205 | 277 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | MobiDBLite | consensus disorder prediction | 469 | 488 | - | - | |
Bpe12g00052 | 645 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 26 | 620 | IPR006515 | GO:0003723 | |
Bpe12g00052 | 645 | CDD | RRM4_I_PABPs | 306 | 384 | - | - | |
Bpe12g00052 | 645 | Gene3D | - | 543 | 626 | - | - | |
Bpe12g00052 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 307 | 384 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | CDD | RRM2_I_PABPs | 111 | 187 | IPR045305 | - | |
Bpe12g00052 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 97 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 206 | 274 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 309 | 377 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 115 | 182 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | SUPERFAMILY | PABC (PABP) domain | 488 | 637 | IPR036053 | GO:0003723 | |
Bpe12g00052 | 645 | SUPERFAMILY | RNA-binding domain, RBD | 204 | 386 | IPR035979 | GO:0003676 | |
Bpe12g00052 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 113 | 185 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | SMART | poly_2 | 559 | 622 | IPR002004 | GO:0003723 | |
Bpe12g00052 | 645 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 103 | IPR000504 | GO:0003723 | |
Bpe12g00052 | 645 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 14 | 629 | - | - | |
Bpe12g00052 | 645 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 194 | IPR035979 | GO:0003676 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe12g00052 | Bpe15g00903 | CCT | |
Bpe12g00052 | Bpe15g00903 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe03g00877 | Bpe-Chr3:28518064 | Bpe12g00052 | Bpe-Chr12:406231 | 1.54E-06 | dispersed | |
Bpe03g01262 | Bpe-Chr3:31206619 | Bpe12g00052 | Bpe-Chr12:406231 | 1.65E-19 | dispersed | |
Bpe09g00282 | Bpe-Chr9:2185705 | Bpe12g00052 | Bpe-Chr12:406231 | 1.38E-06 | dispersed | |
Bpe11g00546 | Bpe-Chr11:4185893 | Bpe12g00052 | Bpe-Chr12:406231 | 9.10E-12 | dispersed | |
Bpe02g00197 | Bpe-Chr2:1375476 | Bpe12g00052 | Bpe-Chr12:406231 | 0 | transposed | |
Bpe02g01797 | Bpe-Chr2:20227109 | Bpe12g00052 | Bpe-Chr12:406231 | 0 | transposed | |
Bpe05g00295 | Bpe-Chr5:16216596 | Bpe12g00052 | Bpe-Chr12:406231 | 1.04E-07 | transposed | |
Bpe05g01075 | Bpe-Chr5:23258859 | Bpe12g00052 | Bpe-Chr12:406231 | 8.10E-07 | transposed | |
Bpe12g00052 | Bpe-Chr12:406231 | Bpe15g00903 | Bpe-Chr15:18896488 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe12g00052 | K13126 | - | jre:108988866 | 1069.68 |